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Report for CCDS28255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28255.1 Public Mus musculus 16 Or5ac24 23 108 98 CCDS HistoryNCBI Gene:258993Re-query CCDS DB by CCDS ID:28255.1Re-query CCDS DB by GeneID:258993See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084791.3 ENSMUSP00000081849.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084791.3Link to Ensembl Protein Viewer:ENSMUSP00000081849.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084791Re-query CCDS DB by Protein ID:ENSMUSP00000081849
Original member Current member EBI ENSMUST00000207927.2 ENSMUSP00000146906.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207927.2Link to Ensembl Protein Viewer:ENSMUSP00000146906.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207927Re-query CCDS DB by Protein ID:ENSMUSP00000146906
Original member Current member NCBI NM_146991.2 NP_667202.1 Accepted alive Link to Nucleotide Sequence:NM_146991.2Link to Protein Sequence:NP_667202.1Re-query CCDS DB by Nucleotide ID:NM_146991Re-query CCDS DB by Protein ID:NP_667202Link to BLAST:NP_667202.1

Chromosomal Locations for CCDS 28255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59344779 59345699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGAGAAGAACAGCACCCTGCTGACAGAATTTGTTCTCAGAGGAATAACAGATCGTTCAGAGCTTCAAG
TTCCCCTCCTCCTGGTGTTCTTTCTCATCTATGTCACCACTATGGTGGGCAACCTTGGCTTAATCTTTCT
CATCTGGAAGGACCCTCATCTTCACACACCCATGTACCTTTTCCTTGGAAATTTAGCCTTTGCTGATGCT
TGTATTTCAACCACAGTGACCCCAAAAATGCTTATGAAATTTTTAAATAAGAATGACATGATATCTGTGG
GTGAGTGTTTTGCCCAATATTATTTTTTTTGTATCAGTGCAACTACTGAAATTTTCCTTCTGGTAGCGAT
GGCCTATGACCGCTATGTAGCCATATGCAACCCTCTGCTCTATCTAGTGGTGATGTCCAAAAGACTCTGC
ACTGTGTTAATCAGTATATCCTATATAATTGGTTTTGTAAACTGTGGACTTAATATAGGATTATTATTTA
GATTAACTTTCTGTAAATCCAATATAATTGACCATTTCTACTGTGAAATCTTGCAACTGTATACAATTTC
TTGCACAGATCCATCTCTTAACACATTGGTCGTTTTTATTTGTGCTTCTTCCATACAAATCAGTACCTCT
GTGACTATCATAGTCTCTTATGCCCGTGTCCTATTTGCTGTCCTGAACATGAAGTCTGAGAGGGGCAGAA
GGAAAGCTTTCTTCACCTGCAGTGCCCACCTGCTCTCCGTTTCTTTGTTCTATGGTACCCTCCTCTTCAT
GTACGTGAGCCCTGGGTCTGGATCAGGTAAACAAAAGGATAAAATATATTCTCTGTTCTACACAGTTGTG
ATTCCTCTGCTAAACCCATTTATTTACAGCTTAAGAAACAAGGAAGTTTTGGGTGCTCTGAAAAAATTTA
TAAAATGTTAA

Translation (306 aa):
MEKNSTLLTEFVLRGITDRSELQVPLLLVFFLIYVTTMVGNLGLIFLIWKDPHLHTPMYLFLGNLAFADA
CISTTVTPKMLMKFLNKNDMISVGECFAQYYFFCISATTEIFLLVAMAYDRYVAICNPLLYLVVMSKRLC
TVLISISYIIGFVNCGLNIGLLFRLTFCKSNIIDHFYCEILQLYTISCTDPSLNTLVVFICASSIQISTS
VTIIVSYARVLFAVLNMKSERGRRKAFFTCSAHLLSVSLFYGTLLFMYVSPGSGSGKQKDKIYSLFYTVV
IPLLNPFIYSLRNKEVLGALKKFIKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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