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Report for CCDS85867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85867.1 Public Mus musculus Y Ssty1 23 108 98 CCDS HistoryNCBI Gene:20611Re-query CCDS DB by CCDS ID:85867.1Re-query CCDS DB by GeneID:20611See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180056.1 ENSMUSP00000137527.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180056.1Link to Ensembl Protein Viewer:ENSMUSP00000137527.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180056Re-query CCDS DB by Protein ID:ENSMUSP00000137527
Original member Current member EBI ENSMUST00000186035.1 ENSMUSP00000139883.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186035.1Link to Ensembl Protein Viewer:ENSMUSP00000139883.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186035Re-query CCDS DB by Protein ID:ENSMUSP00000139883
Original member Current member NCBI NM_009220.2 NP_033246.2 Accepted alive Link to Nucleotide Sequence:NM_009220.2Link to Protein Sequence:NP_033246.2Re-query CCDS DB by Nucleotide ID:NM_009220Re-query CCDS DB by Protein ID:NP_033246Link to BLAST:NP_033246.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033246.2 232 P13675 232 99.569% 0 1

Chromosomal Locations for CCDS 85867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 18090734 18091432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGTCATCCCTCATGAAGAAGAGGAGGAGGAAGTCTTCTTCCAACACCCTGAGGAATATTGTCAGCTGCA
GAATTTCTCACAGTTGGAAGGAAGGTAATGAGCCTGTCACCCAATGGAAGGCCATAGTTCTAGATCAACT
GCCAACAAACCCTTCTCTTTACTTGGTGAAGTATGATGGAATTGACAGCATCTACGTACTGGAGCTCTAC
AGTGATGACAGGATTTTAAACCTTAAGGTTTTGCCTCCCATAGTAGTATTTCCTCAGGTGAGGGATGCCC
ACCTCGCCAGAGCCCTGGTTGGCAGAGCGGTACAACACAAATTTGAGAGGAAAGATGGCTCTGAGGTCAA
CTGGAGGGGGGTGGTGCTAGCCCAGGTGCCAATCATGAAGGATTTGTTTTACATTACCTACAAGAAGGAT
CCAGCTCTCTATGCTTATCAGCTCCTGGATGACTACAAGGAAGGTAACCTCCACATGATTCCAGACACTC
CTCCGGCTGAGGAGAGATCAGGAGATGACAGTGATGTGTTGATTGGTAACTGGGTGGAGTACACCAGAAA
AGATGGTTCCAAAAAGTTCGGAAAGGTTGTTTACCAAGTTCTAGCCAATCCTTCCGTGTACTTTATCAAG
TTTCATGGTGACATCCATATCTATGTCTATACTATGGTGCCAAAGATTCTTGAAGTTGAAAAATCATAA

Translation (232 aa):
MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYVLELY
SDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKD
PALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIK
FHGDIHIYVYTMVPKILEVEKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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