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Report for CCDS19116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19116.1 Public Mus musculus 5 Kcnh2 23 108 98 CCDS HistoryNCBI Gene:16511Re-query CCDS DB by CCDS ID:19116.1Re-query CCDS DB by GeneID:16511See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036092.9 ENSMUSP00000047705.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036092.9Link to Ensembl Protein Viewer:ENSMUSP00000047705.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036092Re-query CCDS DB by Protein ID:ENSMUSP00000047705
Original member Current member NCBI NM_013569.2 NP_038597.2 Accepted alive Link to Nucleotide Sequence:NM_013569.2Link to Protein Sequence:NP_038597.2Re-query CCDS DB by Nucleotide ID:NM_013569Re-query CCDS DB by Protein ID:NP_038597Link to BLAST:NP_038597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038597.2 1162 O35219-1 1162 99.9139% 0 1

Chromosomal Locations for CCDS 19116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24320000 24320149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24321245 24321422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24321636 24321822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24321946 24322221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24322655 24322754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24323071 24323264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24324333 24324585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24324956 24325155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24325494 24325881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24326349 24326777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24330911 24331122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24331663 24332112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24332892 24333056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24348311 24348541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24351208 24351283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3489 nt):
ATGCCGGTGCGGAGGGGCCACGTCGCGCCGCAGAACACCTTCCTCGACACCATCATCCGCAAGTTTGAGG
GCCAGAGCCGCAAGTTCATCATCGCTAACGCGCGCGTAGAGAACTGCGCTGTCATCTACTGCAACGACGG
CTTCTGCGAACTGTGTGGCTACTCGCGGGCCGAGGTGATGCAGCGGCCCTGCACCTGCGATTTCCTGCAT
GGGCCGCGCACGCAGCGCCGTGCCGCCGCGCAGATCGCGCAGGCCCTGCTGGGCGCAGAGGAGCGCAAAG
TGGAGATCGCCTTCTACCGGAAAGATGGGAGCTGCTTCCTGTGTCTGGTGGATGTGGTACCCGTGAAGAA
TGAAGATGGGGCTGTGATCATGTTCATCCTCAACTTTGAAGTAGTGATGGAGAAGGACATGGTAGGGTCC
CCGGCTCATGACACCAACCACAGGGGCCCCTCTACCAGCTGGCTAGCTTCTGGCCGGGCCAAGACTTTCC
GCCTGAAGCTGCCTGCCTTGTTGGCACTGACGGCCAGGGAATCATCTGTGCGGACAGGAAGCATGCGCAG
TGCTGGAGCCCCTGGGGCGGTGGTGGTGGATGTGGACCTGACGCCGGCAGCACCCAGCAGTGAGTCCCTG
GCCTTGGATGAGGTTTCTGCCATGGACAACCATGTGGCAGGGCTTGGGCCTGCAGAAGAGAGGCGAGCAC
TGGTGGGCCCGGGGTCTGCTTCACCAGTAGCCAGCATCCGAGGCCCTCACCCATCGCCACGAGCTCAGAG
CCTTAACCCTGATGCCTCAGGTTCCAGCTGCAGCCTGGCCCGGACACGCTCCCGTGAGAGCTGCGCTAGC
GTGCGCCGCGCATCATCCGCGGATGACATTGAGGCAATGCGGGCTGGAGCGCTGCCCCCTCCGCCCCGCC
ATGCAAGCACAGGGGCCATGCACCCCCTGCGCAGTGGCCTGCTTAACTCCACCTCAGACTCTGACCTTGT
ACGCTACCGAACCATTAGCAAGATACCCCAAATCACTCTCAACTTTGTGGACCTCAAAGGCGACCCTTTC
CTGGCTTCACCCACCAGTGACCGGGAGATTATAGCACCCAAGATAAAAGAGCGGACCCACAATGTCACCG
AGAAGGTCACCCAGGTCCTGTCCTTGGGAGCAGATGTGCTGCCTGAGTATAAGCTGCAGGCCCCAAGAAT
CCACCGCTGGACCATCCTCCACTACAGCCCCTTCAAGGCGGTGTGGGACTGGCTCATCCTGCTGCTGGTC
ATCTACACGGCAGTCTTCACACCGTACTCGGCCGCCTTCCTGCTGAAGGAGACTGAAGATGGGTCCCAAG
CCCCTGACTGTGGCTACGCCTGCCAGCCCCTGGCTGTAGTGGACCTCATCGTGGACATCATGTTCATTGT
GGACATCCTTATCAATTTCCGTACCACCTATGTTAATGCCAACGAGGAGGTGGTTAGCCATCCTGGCCGC
ATTGCTGTGCACTACTTCAAGGGCTGGTTTCTCATTGACATGGTGGCTGCCATCCCCTTCGACCTGCTCA
TCTTTGGCTCTGGCTCCGAGGAGCTGATCGGGCTGCTGAAAACTGCGAGGCTGCTGCGGCTGGTGCGCGT
GGCTCGGAAGCTGGACCGCTACTCGGAGTACGGGGCAGCAGTGCTCTTCCTGCTCATGTGCACCTTCGCC
CTCATTGCGCACTGGTTGGCCTGCATCTGGTACGCGATCGGCAACATGGAACAGCCTCACATGGACTCAC
ACATCGGCTGGCTGCACAACTTGGGCGACCAGATCGGCAAGCCCTACAACAGCAGCGGCCTGGGAGGCCC
CTCCATCAAGGACAAGTATGTCACAGCGCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGC
AATGTCTCTCCCAACACCAACTCAGAGAAGATCTTCTCCATCTGTGTCATGCTCATTGGCTCCCTCATGT
ATGCCAGCATCTTCGGCAACGTGTCCGCCATCATCCAGCGGCTGTACTCGGGCACGGCCCGCTACCACAC
ACAGATGCTCCGGGTGCGGGAGTTTATCCGCTTTCACCAGATTCCCAACCCATTACGCCAGCGCCTCGAG
GAGTACTTCCAGCATGCTTGGTCCTACACCAATGGCATCGACATGAACGCGGTGCTGAAGGGCTTCCCTG
AGTGCCTCCAGGCTGACATCTGCCTACACCTGAACCGCTCGCTGCTGCAGCATTGCAAGCCATTCCGAGG
GGCCACTAAAGGCTGCCTGAGGGCGCTGGCTATGAAGTTCAAGACCACACATGCACCACCAGGGGACACA
CTAGTGCACGCCGGGGACCTGCTTACTGCCCTCTACTTCATCTCCAGGGGCTCCATCGAGATCCTGCGGG
GTGATGTCGTGGTGGCCATCTTGGGGAAGAACGACATCTTTGGAGAGCCTCTGAACCTATATGCCCGTCC
TGGAAAGTCCAATGGGGATGTGCGGGCCCTCACGTACTGTGACCTGCACAAGATCCATCGTGATGACTTG
CTGGAGGTGTTGGACATGTATCCCGAGTTCTCAGATCACTTTTGGTCTAGCCTGGAGATCACCTTCAACC
TTCGAGATACCAACATGATTCCTGGCTCCCCAGGCAGTGCAGAACTAGAGAGCGGCTTTAACAGGCAACG
CAAGCGCAAACTGTCATTCCGCAGGCGTACAGACAAGGACACAGAGCAGCCAGGGGAGGTGTCAGCCCTG
GGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGACAGCCGGGAGGGCCATGGGGGGAGA
GCCCATCCAGCGGCCCTTCCAGCCCAGAGAGCAGTGAAGATGAGGGCCCTGGTCGCAGCTCCAGTCCCCT
CCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCGGGAGACCCCCCAGGTGGGGAGCCTTTGACAGAGGAT
GGGGAGAAAAGTGACACCTGTAATCCCTTGTCAGGTGCCTTCTCTGGGGTGTCCAATATTTTCAGCTTCT
GGGGGGACAGTCGGGGGCGCCAGTACCAGGAGTTGCCTCGATGCCCTGCCCCTGCCCCCAGCCTCCTCAA
CATCCCCTTGTCTAGCCCTGGTCGGCGATCCCGGGGTGATGTGGAGAGCAGGCTGGACGCACTCCAGAGA
CAGCTGAACAGGCTGGAAACCCGGCTAAGTGCAGACATGGCCACTGTCCTACAGCTGCTACAGAGGCAAA
TGACCCTGGTCCCTCCTGCCTACAGTGCTGTGACCACCCCTGGGCCCGGCCCCACTTCCGCATCCCCTTT
GTTGCCTGTCGGCCCTGTCCCCACTCTCACCCTGGACTCGCTTTCTCAGGTTTCCCAGTTCGTGGCGTTT
GAGGAGCTTCCTGCAGGAGCCCCAGAGCTCCCCCAAGATGGCCCCACTCGACGCCTCTCCCTGCCCGGCC
AGCTGGGGGCCCTTACCTCCCAGCCCCTGCACAGACATGGCTCAGATCCAGGCAGTTAG

Translation (1162 aa):
MPVRRGHVAPQNTFLDTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH
GPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEKDMVGS
PAHDTNHRGPSTSWLASGRAKTFRLKLPALLALTARESSVRTGSMRSAGAPGAVVVDVDLTPAAPSSESL
ALDEVSAMDNHVAGLGPAEERRALVGPGSASPVASIRGPHPSPRAQSLNPDASGSSCSLARTRSRESCAS
VRRASSADDIEAMRAGALPPPPRHASTGAMHPLRSGLLNSTSDSDLVRYRTISKIPQITLNFVDLKGDPF
LASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLV
IYTAVFTPYSAAFLLKETEDGSQAPDCGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANEEVVSHPGR
IAVHYFKGWFLIDMVAAIPFDLLIFGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFA
LIAHWLACIWYAIGNMEQPHMDSHIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFSSLTSVGFG
NVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLE
EYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDT
LVHAGDLLTALYFISRGSIEILRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDL
LEVLDMYPEFSDHFWSSLEITFNLRDTNMIPGSPGSAELESGFNRQRKRKLSFRRRTDKDTEQPGEVSAL
GQGPARVGPGPSCRGQPGGPWGESPSSGPSSPESSEDEGPGRSSSPLRLVPFSSPRPPGDPPGGEPLTED
GEKSDTCNPLSGAFSGVSNIFSFWGDSRGRQYQELPRCPAPAPSLLNIPLSSPGRRSRGDVESRLDALQR
QLNRLETRLSADMATVLQLLQRQMTLVPPAYSAVTTPGPGPTSASPLLPVGPVPTLTLDSLSQVSQFVAF
EELPAGAPELPQDGPTRRLSLPGQLGALTSQPLHRHGSDPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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