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Report for CCDS30081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30081.1 Public Mus musculus X Rhox7a 23 108 98 CCDS HistoryNCBI Gene:547168Re-query CCDS DB by CCDS ID:30081.1Re-query CCDS DB by GeneID:547168See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096454.1 ENSMUSP00000094193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096454.1Link to Ensembl Protein Viewer:ENSMUSP00000094193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000096454Re-query CCDS DB by Protein ID:ENSMUSP00000094193
Original member Current member NCBI NM_001025086.2 NP_001020257.2 Accepted alive Link to Nucleotide Sequence:NM_001025086.2Link to Protein Sequence:NP_001020257.2Re-query CCDS DB by Nucleotide ID:NM_001025086Re-query CCDS DB by Protein ID:NP_001020257Link to BLAST:NP_001020257.2

Chromosomal Locations for CCDS 30081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37833065 37833111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37834232 37834277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37835677 37835746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37838152 37838519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37839217 37839368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37839992 37840037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37841055 37841171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGAGACCATGTTCCAAGAGACTCAGTACCCAGATGTGCTTACAAGAGAGGTGCTTGCCAGAAGCATGG
ATGGGTCTGAAGCCAAGGTGCAGATAAGGTTTAACAACAGGAGAGCCAAACAGAGGGCCAGGGAGAAGAA
AGCAATGCTCAGGAGCACAGCAGGTGCAAAAGCCCCCCTGGTCTTGCCTGCTGGTGAGGAAAGAAATGGG
GAAGATTCACGTGACCAGTCCTCCCCTGGACTGGGAGCCTCTGCAGCAGAATGGGGCGGAGTAGAAGGAC
CAGGGGAACTGGGGAGAAAGGAGAAGAATGGAGCCAGTCCTTCTGCTGTAGACACCTCTGGCGTCAGGGG
TGACTGGACCCAAAAGGGGGCCAGCGGCAGTAGCCAGAAAAATGAGCGTCGGCCTCAGAATCGGGTCCCT
GAGTGTAGGTGGGGCACTGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAGGCAGC
GTGTGGGATCCCGATCCCGGGGACAGTCTGTGTCTCTAAAGTGCCCCCGCATACGGCCAGTTTTGGTGTC
CACTGTACAGCCTGTGCCAGTGCTGGTGCCCCACCGCCCCCTCCGGGACGGATTTACAGAGCCACAGCTG
CAGGAGCTGGAACAGGTTTTCCAGAGAAACCACTATCTCCGTGCTGAAGAAGGAAAACAGCTGGCAAGGG
GAACGGGTGTGACTGAGGCCAAGTTGCAGAGATGGTTTAAGAAGAGGAGAGTGCAGTTCAGGAGAGAACA
CAGTCAGTCAAGGATGAATGATGATGCCCCACCCAGGACCCACTCCACCTCTCTGAAGATGGCGCAGGAG
CCCTAG

Translation (281 aa):
METMFQETQYPDVLTREVLARSMDGSEAKVQIRFNNRRAKQRAREKKAMLRSTAGAKAPLVLPAGEERNG
EDSRDQSSPGLGASAAEWGGVEGPGELGRKEKNGASPSAVDTSGVRGDWTQKGASGSSQKNERRPQNRVP
ECRWGTEDVHPVPVLVPRAQRRQRVGSRSRGQSVSLKCPRIRPVLVSTVQPVPVLVPHRPLRDGFTEPQL
QELEQVFQRNHYLRAEEGKQLARGTGVTEAKLQRWFKKRRVQFRREHSQSRMNDDAPPRTHSTSLKMAQE
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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