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Report for CCDS39862.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39862.2 Public Mus musculus 7 Nccrp1 23 108 98 CCDS HistoryNCBI Gene:233038Re-query CCDS DB by CCDS ID:39862.2Re-query CCDS DB by GeneID:233038See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 39862.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39862.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239002.1 ENSMUSP00000159104.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239002.1Link to Ensembl Protein Viewer:ENSMUSP00000159104.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239002Re-query CCDS DB by Protein ID:ENSMUSP00000159104
Original member Current member NCBI NM_001081115.2 NP_001074584.2 Accepted alive Link to Nucleotide Sequence:NM_001081115.2Link to Protein Sequence:NP_001074584.2Re-query CCDS DB by Nucleotide ID:NM_001081115Re-query CCDS DB by Protein ID:NP_001074584Link to BLAST:NP_001074584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074584.2 266 G3X9C2 266 100% 0 0

Chromosomal Locations for CCDS 39862.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28544132 28544272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28544422 28544560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28545239 28545334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28546156 28546207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28546290 28546352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28546751 28547060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGAGAAGACACAGGACAGAGACACGCTCAGTGGCAGGATGGAAGCCGAGGGGTCCCTGAACTCGGAGG
AACTGCCGCCGCATCCCCAGTCCCCGCCACCACCGCCGTCCCCAAGGTCTCCCACGTCCCCGGTGACCCC
GGAGCTCCCGCAGCCCAATGCACCGACTGAGGTTGAAGCCAGGCAGCTGCTAGTAGAAGAATGGGGACCC
CTGAGCGGGAAGCTGGAGCTGCCCCCGAGAATCAGCTGGCAGCTGCTGTTCCTGGAGCGGCCGCTCTACC
GCAACCTGCTCAGCTCACCCAACCCAGAAGGCATTAATATCTACCAGCCGGCGCCCCCCACGGGTCCCAC
CCGAAAACCCCTGAAGGAGCTGGGTAATTTCCGTGGATGGTACATTACCACTCAGAACCTCCAGGGGCCT
CTCAGCTGGACTGTGAAGGAGCAGTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGGAGCTGCTGGATG
ACGAACAGCCTGACATCACCATCATGGACTGGTTCGAGGACAGCCGCCTAGACCAGTGTGTTTATGAGCT
GCATGTCTGGCTGTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAAT
GGGAGAGGACCCCCTGGCCGCTGGATTCAGGTGTCCCACGTCTTCCGCCAGTACGGCCCCGGAGTGCGCT
TTGTCTACTTCCAGCACAAGGCTAAGAACCGCATGGAGCCTGGGGGACTGCGGAGGACAAGGGTGACCGA
CTCTTCTGTGTCTGTGCAGCTCCGGGAGTGA

Translation (266 aa):
MEKTQDRDTLSGRMEAEGSLNSEELPPHPQSPPPPPSPRSPTSPVTPELPQPNAPTEVEARQLLVEEWGP
LSGKLELPPRISWQLLFLERPLYRNLLSSPNPEGINIYQPAPPTGPTRKPLKELGNFRGWYITTQNLQGP
LSWTVKEQCVNLLAKKLWEELLDDEQPDITIMDWFEDSRLDQCVYELHVWLLAADRRTVIAQHHVAPRTN
GRGPPGRWIQVSHVFRQYGPGVRFVYFQHKAKNRMEPGGLRRTRVTDSSVSVQLRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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