NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49966.1 Public Mus musculus 17 Vmn2r90 23 108 98 CCDS HistoryNCBI Gene:626942Re-query CCDS DB by CCDS ID:49966.1Re-query CCDS DB by GeneID:626942See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169805.2 ENSMUSP00000126650.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169805.2Link to Ensembl Protein Viewer:ENSMUSP00000126650.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169805Re-query CCDS DB by Protein ID:ENSMUSP00000126650
Original member Current member NCBI NM_001104539.1 NP_001098009.1 Accepted alive Link to Nucleotide Sequence:NM_001104539.1Link to Protein Sequence:NP_001098009.1Re-query CCDS DB by Nucleotide ID:NM_001104539Re-query CCDS DB by Protein ID:NP_001098009Link to BLAST:NP_001098009.1

Chromosomal Locations for CCDS 49966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17703941 17704149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17712042 17712333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17712681 17713487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17726771 17726998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17728030 17728153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17733236 17734167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2592 nt):
ATGTTCTGGATTTTGATTTTTGGGCTCTTGTATTTTCTTAATATCGTGTGTGCCATTACTAACAATAACT
GCTATACAACAATCAAGGAGAATTTTCATGTTAAAGGAGATGTGAAGATTGGTGCTTTTTTTTCTCTTCA
TATTTACTACACAGGCAATAATATTCCTGATACAATAGACCCATACTATTTCAAGGATGTGCACTTACAG
TATAAATTCAAAAACTACCAGTTTCTTCTGGCCCTGTTATTTGCCATTGAGGAGATCAACAAAAACCCTC
ATCTTCTACCCAATATAACTTTGGGCTTTGATTTCTATAATGTTCGATTTACTGAAAAATCTATTCTTGA
AGGTCCTCTGACTTGGCTCACAATGTTACCATATGCTATACCTAATTATAGCTGTGAAAATAAGAGTAAC
CCCCCTGCTGCCCTCACAGGAACATCATGGTCAACATCTGCTCACATTGGGACACTGCTACAACTCTACA
AAATACCTCAGCTCACTTTTGGGCCTTTTGATTCTATTTTAAATAACCAAGAACAGCTTAATTATGTCTA
TCAGATGGCCCCCAAGGACACATTTCTTTCTCTTGCCATAGTCTCTTTGATGCTTCATTTCAGTTGGTCC
TGGGTTGGTCTGATTATCCCAGATGACCACAAAGGGACACAGATTTTGTCTGACTTGAGACAAGTTATGG
AGAGAAATAACATTTGCATAGCCTCTGTGCAAATGATCCCTGGCATCTGGAATTCATTTTCAAATGCATT
ATGGAAAAGTCTGGTCCAGACTAAGGAATCATCAGCAAATGTGACAGTTGTTTGTGGTGACATTGTTTCT
CTACAAGGTTTAATGCGACATATTGCACAGTTGTTAGTGACTTGGAAAGTCTGGGTCTTAAACTCTCAAT
GGGATGTTGACACCCATTCTGATTATTTCATGTTAGAGTCATTACATGGAAGTTTCATTTTTTCACACCA
CCATGAAGAGATGGCTGAATTTACAAATTTTATTAGAACAGTTAACCCCTACAAATACCCAGAAGACAAT
TATCTTCCTAAGTTTTGGTATTTATTCTTCAAGTGCTCATTTTCTGAGTTTGATTGCCAACTTTTGGAAA
ACTGCCAACCCAATGCTTCTTTGGAGTTACTGCCAAGATACCTTTTTGACCCAGTCATGAGTGAAGAGAG
CTACAATATATATAACGCTGTGTATGCTGTTGCCTACAGTCTCCATGAGATGAATCTTCAGCAAATACAG
ATACAAAGATATGCTAATGGAGAAAAAATGGTAGCCTTCCCTTGGGAGGTCCTCCCTTTCCTAAAGAACA
CCCTACTGAAGCATCGTATGAGAGGTCACACAGATTTGGATGGGAAAAGAAAATTAGATTCAGAATATGA
CATTCTAAATTTTTGGAATTTTCCAAAAGGTCTTGCGTTAAAGGTGAAAGTAGGAAACTTTTCTCCAAAT
GCTCCCCATGGTCAACAGTTGATGTTAGCAGAAAAGAGGATACAATGGCCTCTAATGTTTACAAATATTC
CTCAGTCTGTGTGCAGTGAGAGCTGTAGACCTGGATTCAGGAAATCTGTCCAGGAAGGAGAGCCTACCTG
CTGTTTTTATTGCACTCCTTGTGCAGACAATGAGATTTCCAATGAGACAGATATGGATGAGTGTGTGAAG
TGTCCAGAAAGTCACTATGCAAACTCAGAGAAGAACCACTGCCTCCAGAAATCTGTGAGCTTTTTGGCCT
ATGAAGACTCCTTGGGCATAGCTCTCACCACCACAGCACTGTGCTTATCTGTGCTTACAGCTGTGGTTCT
TGTAGTCTTTGTGAAGCACAGACACACACCCATTGTCAAGGCCAATAATCGGACTCTCAGCTACACCCTC
CTATTGACACTCATCATGTGTTTTCTCAGTTCTTTGCTGTTCATTGGCCAGCCAAACACTACAACTTGTA
TCTTGCAGCAGACAGCATTTGGAATTTTTTTCACTGTGGCTCTCTCCACAGTGTTAGCCAAAGCTATTAC
AGTGGTTATTGCATTCAAGGTCACTGTTCCAAATAGAAAGGTGAGGCGGTTAATGATATCAAGGGCGCCT
AATTTCATCATTCCCATCTGCACACTTGTCCAACTTCTCTTCTGTGGAATATGGCTTATTACTTCTCCAC
CCTTCATTGATCAAAATGCTCATGCTGAACATGGTAACATCATCATTTTGTGCAACAAGGGTTCAGCAGT
TGCCTTCCATTGTGTCCTGGGATACCTTTGCTTCTTGGCACTTGTGAGCTACACCCTGGCCTTCTTTTCC
AGGAATCTGCCTGACACATTCAATGAAGCCAAATTCCTGTCATTCAGCATGCAAGTATTCTTCTGTGTCT
GGATCACCTTCCTCCCTGTCTACCATAGCACAAAAGGAAAAGTAATGGTGGCTATGGAAGTCTTCTCTAT
GTTGGCTTCCAGTACAGCTCTCCTTAGCTTGATCTTTGGCCCCAAGTGCTACATTATTTTATTAAGGCCA
GATAAGAATGTCTGTCTTGACATCAGACATAAATCCCATTCAAAAAGGAATAGTGGTTTAAATTTTATTT
AA

Translation (863 aa):
MFWILIFGLLYFLNIVCAITNNNCYTTIKENFHVKGDVKIGAFFSLHIYYTGNNIPDTIDPYYFKDVHLQ
YKFKNYQFLLALLFAIEEINKNPHLLPNITLGFDFYNVRFTEKSILEGPLTWLTMLPYAIPNYSCENKSN
PPAALTGTSWSTSAHIGTLLQLYKIPQLTFGPFDSILNNQEQLNYVYQMAPKDTFLSLAIVSLMLHFSWS
WVGLIIPDDHKGTQILSDLRQVMERNNICIASVQMIPGIWNSFSNALWKSLVQTKESSANVTVVCGDIVS
LQGLMRHIAQLLVTWKVWVLNSQWDVDTHSDYFMLESLHGSFIFSHHHEEMAEFTNFIRTVNPYKYPEDN
YLPKFWYLFFKCSFSEFDCQLLENCQPNASLELLPRYLFDPVMSEESYNIYNAVYAVAYSLHEMNLQQIQ
IQRYANGEKMVAFPWEVLPFLKNTLLKHRMRGHTDLDGKRKLDSEYDILNFWNFPKGLALKVKVGNFSPN
APHGQQLMLAEKRIQWPLMFTNIPQSVCSESCRPGFRKSVQEGEPTCCFYCTPCADNEISNETDMDECVK
CPESHYANSEKNHCLQKSVSFLAYEDSLGIALTTTALCLSVLTAVVLVVFVKHRHTPIVKANNRTLSYTL
LLTLIMCFLSSLLFIGQPNTTTCILQQTAFGIFFTVALSTVLAKAITVVIAFKVTVPNRKVRRLMISRAP
NFIIPICTLVQLLFCGIWLITSPPFIDQNAHAEHGNIIILCNKGSAVAFHCVLGYLCFLALVSYTLAFFS
RNLPDTFNEAKFLSFSMQVFFCVWITFLPVYHSTKGKVMVAMEVFSMLASSTALLSLIFGPKCYIILLRP
DKNVCLDIRHKSHSKRNSGLNFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH