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Report for CCDS88768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88768.1 Public Mus musculus 15 Tatdn1 23 108 98 CCDS HistoryNCBI Gene:69694Re-query CCDS DB by CCDS ID:88768.1Re-query CCDS DB by GeneID:69694See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228538.2 ENSMUSP00000154677.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228538.2Link to Ensembl Protein Viewer:ENSMUSP00000154677.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228538Re-query CCDS DB by Protein ID:ENSMUSP00000154677
Original member Current member NCBI NM_001368428.1 NP_001355357.1 Accepted alive Link to Nucleotide Sequence:NM_001368428.1Link to Protein Sequence:NP_001355357.1Re-query CCDS DB by Nucleotide ID:NM_001368428Re-query CCDS DB by Protein ID:NP_001355357Link to BLAST:NP_001355357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355357.1 295 Q6P8M1-1 295 100% 0 0

Chromosomal Locations for CCDS 88768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58900974 58901070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58904734 58904860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58905741 58905811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58909573 58909649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58916152 58916192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58916277 58916362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58921140 58921182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58921274 58921417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58923905 58923968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58926436 58926485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58928684 58928749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58933679 58933700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGAGTCTCTTCAAGTTCGTGGATATTGGCATCAACCTGACAGATCCTATGTTCAGAGGAATTTATAGGG
GGGTGCAGAAGCATCAAGATGACTTACAAGATGTAATAGAGAGAGCTATCCAGATTGGTGTTAAAAAGTT
TATGATCACAGGTGGAAGTCTCCAAGACAGTAAAGATGCACTGCAGTTGGCACAAACAAATGACATGTTT
TTCAGTACAGTGGGGTGTCACCCCACGAGATGTGATGAGTTTGAGAAGGGTAGCCCTGATCAGTACTTAG
CAGGATTGCTGAGCCTTGCTGAGAACAACAAAGGAAAAGTTGTTGCAATAGGAGAATGTGGACTTGATTT
TGACCGACTTCAGTTTTGTCCCAAAGATACTCAACTCAAATATTTTGAAAAACAATTTGAACTGTCAGAA
CAAACACAATTACCAATGTTTCTTCATTGTCGCAATTCACATACTGAGTTTTTAGATATTATGAGAAGAA
ATAGAGACCGGTATGTGGGTGGAGTGGTCCATTCGTTTGATGGCACGAAGGAAGCAGCAGCTGCTTTGGT
TGACTTGGGCCTTTATATAGGATTTAATGGTTGCTCTCTGAAAACTGAAGCTAACTTGGAAGTTCTGAAG
TCAATACCTAGTGAAAAACTAATGATTGAGACAGATGCACCTTGGTGTGGAGTTAAAAGTACACATGCTG
GATCAAAATACATAAACACTTCATTTCCTACCAAAAAGAAATGGGAAAACGGGCACTGCTTAAAAGATAG
AAACGAGCCCTGCCACATCATTCAAATATTGGAGATAATGTCAGCAGTCAGAGAAGAAGACCCACTGGAA
TTGGCCAACACGCTCTATAACAACACCATTAAAGTGTTTTTTTCCTGA

Translation (295 aa):
MSLFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIERAIQIGVKKFMITGGSLQDSKDALQLAQTNDMF
FSTVGCHPTRCDEFEKGSPDQYLAGLLSLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSE
QTQLPMFLHCRNSHTEFLDIMRRNRDRYVGGVVHSFDGTKEAAAALVDLGLYIGFNGCSLKTEANLEVLK
SIPSEKLMIETDAPWCGVKSTHAGSKYINTSFPTKKKWENGHCLKDRNEPCHIIQILEIMSAVREEDPLE
LANTLYNNTIKVFFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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