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Report for CCDS51594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51594.1 Public Mus musculus 5 Vmn2r8 23 108 98 CCDS HistoryNCBI Gene:627479Re-query CCDS DB by CCDS ID:51594.1Re-query CCDS DB by GeneID:627479See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172140.2 ENSMUSP00000126953.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172140.2Link to Ensembl Protein Viewer:ENSMUSP00000126953.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172140Re-query CCDS DB by Protein ID:ENSMUSP00000126953
Original member Current member NCBI NM_001104620.1 NP_001098090.1 Accepted alive Link to Nucleotide Sequence:NM_001104620.1Link to Protein Sequence:NP_001098090.1Re-query CCDS DB by Nucleotide ID:NM_001104620Re-query CCDS DB by Protein ID:NP_001098090Link to BLAST:NP_001098090.1

Chromosomal Locations for CCDS 51594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108797193 108798100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108799246 108799369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108800506 108800730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108801690 108802496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108803095 108803374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108808552 108808754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGAAGAAGCTGCGTACTTTCACTATTTCCTTTTTGCTCCTGAAGTTTTCTCTCATCTTATGCCATGTAA
CTGATCCCATTTGCTTTTGGAGGATAAAGAATAATGAAGAAAATGATGGAGATTTGAGAAGTGACTGTAA
TTTTCTCCTTTGGACAGACTATGAAAGTACTGAATTCAATTTTTATAATATTGTTGATTTTAGAATACCT
GCAAGAAGATATGAGTATTTTCTGGTATTGTTTTTTGCTACTGATGAAATCAACAAGAATCCTGATCTTT
TACCCAACATGTCTTTGATAGTCTGGCTTCTTAGTGGTCAGTGTGGAGATGAATGGTCAGTTCTACATAA
AAATTATTCACAAGAAAATATTAATGTGAAATTTATTAATTATGACTGTTTATCACCAGCCTGTTACATA
GACCTTACAGGACCATCATGGAAAACATCGTTAAAAATGTCAATTCAGTCTAGGACACCAAAGGTTTTCT
TTGGACCATTTAATCCTGACCTGAGGGACCATGACCAGTTTCCCTTTGTCCATCAGGTAGCCACCAAAGA
CACATACTTGTCCCATGCCATGGTCTCCTTGATGCATCATTTTAGATGGATGTGGATAGGACTGGTCATT
TCAGATGATGACCAGGGTATTCAGTTTCTATCAGACTTGAGAGAAGAAATGCAAAGACATGGAATCTGTT
TAGCTTTTGTTAATATGATCCCAGAAAACATGCAGATATACATGACAAGGGCTACGATATATGACAAACA
AATTATGGAATCAACAGCAAAGGTTGTTATCATTTATGGTGAAATGAACTCTACCCTAGAAGTCAGCTTT
AGAAGGTGGGAAGATTTAGGTGTAAGGAGAATCTGGATCACAACATCACAATGGGACGTTATCACAAATA
AAAATGATTTTAGCCTTGATTTCTTCCATGGGACTGTTACTTTTGAACACCACCACAGTGAGATTGCTAA
ATTTAAGAATTTTATGAAAACAATGAACACTGACAAATACCCAGTAAACATTTCTCAGTCTATAGTGGGG
TGGAATTACTTTAATTGTTCAACCTCAATGAACAGCTTTAGCAAAATGGATCATCTTACATTCAACAACA
CATTGGAATGGACAGCACTGCACAATTTTGACATGGTCCTGAGTGAAGAAGGCTACAATTTGTATAATGC
TGTGTATGCTGTGGCCCACACCTACCATGAACTCATTCTTCTACAAGTAGAATCTCAGCAAACAGAAGTA
CCCAAAGGAATATTCACTGACTGTCAGCAGGTGGCTTCCATGCTGAAATCCAGGATATTTACTAACCCTA
TTGGAGAACTGGTGAACATGAAGCATAGGGAAAATCAGTGTGCAGACTATGACATTTTCATCATTTGGAA
TTTTCCACAAGGCCTTGGATTAAAAGTGAAAATAGGAAGCTATTTACATTGTTTTTCACAGAGCCAACAA
CTTCATATATCTGAAGATTTGGAGTGGGCCACAGGAGGAACATCAGTTCCCTCCTCCCTGTGTAGTGTGA
CATGTACTGCTGGATTCAGGAAAATTCATCAGAATGAAACAGCAGACTGCTGCTTTGATTGTGATCAGTG
CCCAGAAAATGAGGTTTCCAATGAAACAGCAGATATGGAACAGTGTGTGAGGTGTCCAGATGATAAATAT
GCCAACTTAGAGAAAACCCACTGCCTTCAAAGAGCTGTGTCATTCCTAGCTTATGAAGATCCATGGGGGA
TGGCTCTAGGATGCATGGCCCTGTTCCTCTCTGCCCTCACAGTTCTAGTACTAGTCACTTTTGTGAAGTA
CAAGGATACTCCCATTGTGAAGGCCAATAACCGCATTCTCAGCTACATCCTGCTCATCTCTCTAGTCTTC
TGTTTTCTCTGCTCATTGCTCTTCATTGGACATCCCAACCAGGCCACCTGTATCCTGCAGCAGACCACAT
TTGGAGTATTTTTCACAGTGGCTATTTCTACAGTGTTGGCTAAAACAATAACTGTGCTCATGGCTTTCAA
GCTCACTACTCCAGGGAGAAGGATGAGAGGGATGCTGGCATCAGGGGCACCTAACTTGGTCATTCCCATT
TGTACCTTAATCCAACTATTTCTCTGTGGAATCTGGTTAGTAACATCTCCTCCCTTTATTGACAGAGAAA
CACAATCTGAATATGGAAAGACCATCATTATTTGTAACAAAGGCTCAGTCATTGCCTTCCACTTTGTTCT
GGGATACTTGGGCTCCTTGGCTCTGGGGAGCTTCACAGTGGCTTTCTTAGCTAGGAACCTTCCTGACAGA
TTCAATGAAGCCAAGTTCCTAACATTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTCCCTG
TCTACCACAGCACCAGGGGAACGGTCATGGTGGTTGTGGAGGTTTTCTCCATCTTGGCTTCTAGTGCAGG
CTTGCTAGGGTGCATCTTTCTTCCAAAATGTTGTGTTATCTTAGTTAGACTAGATTCAAATTTTCTGCAG
AAGTACAAAGATAAATTGCCTTCTTGA

Translation (848 aa):
MKKLRTFTISFLLLKFSLILCHVTDPICFWRIKNNEENDGDLRSDCNFLLWTDYESTEFNFYNIVDFRIP
ARRYEYFLVLFFATDEINKNPDLLPNMSLIVWLLSGQCGDEWSVLHKNYSQENINVKFINYDCLSPACYI
DLTGPSWKTSLKMSIQSRTPKVFFGPFNPDLRDHDQFPFVHQVATKDTYLSHAMVSLMHHFRWMWIGLVI
SDDDQGIQFLSDLREEMQRHGICLAFVNMIPENMQIYMTRATIYDKQIMESTAKVVIIYGEMNSTLEVSF
RRWEDLGVRRIWITTSQWDVITNKNDFSLDFFHGTVTFEHHHSEIAKFKNFMKTMNTDKYPVNISQSIVG
WNYFNCSTSMNSFSKMDHLTFNNTLEWTALHNFDMVLSEEGYNLYNAVYAVAHTYHELILLQVESQQTEV
PKGIFTDCQQVASMLKSRIFTNPIGELVNMKHRENQCADYDIFIIWNFPQGLGLKVKIGSYLHCFSQSQQ
LHISEDLEWATGGTSVPSSLCSVTCTAGFRKIHQNETADCCFDCDQCPENEVSNETADMEQCVRCPDDKY
ANLEKTHCLQRAVSFLAYEDPWGMALGCMALFLSALTVLVLVTFVKYKDTPIVKANNRILSYILLISLVF
CFLCSLLFIGHPNQATCILQQTTFGVFFTVAISTVLAKTITVLMAFKLTTPGRRMRGMLASGAPNLVIPI
CTLIQLFLCGIWLVTSPPFIDRETQSEYGKTIIICNKGSVIAFHFVLGYLGSLALGSFTVAFLARNLPDR
FNEAKFLTFSMLVFCSVWITFLPVYHSTRGTVMVVVEVFSILASSAGLLGCIFLPKCCVILVRLDSNFLQ
KYKDKLPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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