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Report for CCDS52212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52212.1 Public Mus musculus 7 Vmn2r58 23 108 98 CCDS HistoryNCBI Gene:628422Re-query CCDS DB by CCDS ID:52212.1Re-query CCDS DB by GeneID:628422See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171671.2 ENSMUSP00000126966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171671.2Link to Ensembl Protein Viewer:ENSMUSP00000126966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171671Re-query CCDS DB by Protein ID:ENSMUSP00000126966
Original member Current member NCBI NM_001105055.1 NP_001098525.1 Accepted alive Link to Nucleotide Sequence:NM_001105055.1Link to Protein Sequence:NP_001098525.1Re-query CCDS DB by Nucleotide ID:NM_001105055Re-query CCDS DB by Protein ID:NP_001098525Link to BLAST:NP_001098525.1

Chromosomal Locations for CCDS 52212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 41836881 41837809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41860492 41860615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41861842 41862069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41863910 41864716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41865043 41865334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41872462 41872670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGTTCTGGATTTTTACCTTTGGGCTCCTATGTATTCCCATTTTTGTGTGTGCCTTTACTGACAATGAAT
GCTATGTAACATGCAGTGATTACTTTTACCGTGAAGGAGATGTGACAATTGGTGCATTTTTCCCTCTTCA
TATTTATTACACAGGAAACAAAGTTCCTGGTAAATATCTGCCATACAGTTTCCAAGACTATCGTGTACAG
TATAAGTTTAAGAACTACCAATTTGTTCTGGCCCTGGTGTTTGCTATTGAAGAGATCAACAGAAACCCTG
ATCTTTTACCCAATACAACTATTGGATATGATATCTATAATATTCCATTTACTGAAAAGAATATTCTTCG
TAGTATTTTTCTTTGGCGCACAAGAATAATTAATCCCCTTCCTAATTGTGACTGTGGACAGAAGAGAAAG
TCACCTGTTGTACTCACAGGACCATCATGGTCAGCATCTGCCCACATTGGAACATTTCTACAACTCTATA
AAATACCTCAGGTCACCTTTGGCCCTTTTGATTCTATCTTGAATGACCGAGGTCAGTTTAATTCTCTATA
TCAGATGTCCCCCAAGGACACATCTCTGTCGCTTGCTATAGTCTTTTTGTTGCTTCAATTCAGATGGTCC
TGGGTTGGTCTGATCATACCAGATGATCACAGAGGGACTCAGATACTATCAGACTTAAGAGAAAATATGG
AAAACCATGGTATCTGCATAGCCTTTTTGAAAATTATCTCTAGTGCATGGAATGCATTTTCCAATGAACT
ATGGAAAAATATGTATAAGATTGAGGAATCATCAGCAAATGTCATAGTTATTTATGGAGACATTATTTCT
GTACAAGGTTTAATGCGACATATTGCACAACTGTTAGTGACATGGAAAGTCTGGGTCTTGAGCTCTTCAT
GGGATGTTGATACCCACTCTGATTATTTTATGGTAGAGTCATTTCATGGGAGTCTAGTTTTTTCACACCA
CCATGACGAGATGGTTGAGTTTATGAATTTTGTCCAAACAGTTAATCCCTACAAATACCCAGAGGACAAC
TATCTTCCTAAGTTTTGGCATTTGTTTTTCAAGTGCTCATTTTCTGAATTTAATTGTCAACTTTTGGAGA
ACTGCCAACCCAATGCTTCTTTGGATTTACTTCCAAGACACCATTTTGACCCAGCCATGAATGAAGAAGG
CTACAATATTTACAATGCTGTGCGTGCTGTTGCCTATAGTATCCATGAGATGAATCTTCAAAAAATACAG
ACCCAACCATATGCCAAAGGTGAAGAAATGGTATTCTTCCAGTGGCAGCTTCACCCTTTCCTAAAGAACA
CGATAATGAGAAGTCATATAGGAAGACACACAGCAACGCATGGGGGAGGAAACTTAGATGCACAGTACGA
CATTCTTAATTTTTGGAATTTTCCAAGTGGTCTTGGATTAAAGGTGAAAGTAGGAACCTATTCTCTAAGT
GCTCAGCAGGGTCCACAATTCTCTTTATGTGAACAGATGATACAGTGGCCTACAGGGTTTACAATGACTC
CTCAGTCTGTGTGCAGTAAGAGCTGTAGGCCTGGATTCAGGAAAGCTGTCCAGGAAGGCAAGGCTGTCTG
CTGCTTTGATTGTATTCCCTGTGCCGACAATGAGATTTCCAATGAGACAGATATGTATCAGTGCATGAAG
TGTCCAGAAAGTCACTATGCAAACTCAGAGAAGAGCCACTGCCTCCAAAAATCTGTGAGCTTTTTGGCCT
ATGATGAGCCTTTGGGAATGGCACTCATCATCACAGCACTGTGCTTCTCTCTACTAATAGCTGCGGTTCT
TGTAGTCTTTGTGAAGCACAGAGACACACCCATCGTCAAGGCCAATAACAGGACTCTCAGTTACATCCTG
CTCTTGACACTATTCATCTGTTTACTCAGTTCCTTCCTCTTCATTGGACAGCCCAACACAACAACCTGCA
TCTTGCAGCAGACAGCATTTGGAATTTTGTTCACTGTGGCTCTCTCCACAGTGTTGGCCAAAGCTATTAC
AGTAGTTATTGCATTCAAGGCCACAGTTCCAGCTAGAATGGTGAGATGGTTAATGGTATCAAGAGCCCCT
AATTTCATCATTCCCATCTGTACACTGATCCAACTTATTATCTGTGGAATCTGGCTGGTTACCTCTCCAC
CCTTCATTGATCAAGATACTCAGACTGAACATGGCCACATCATCATTGTATGCAACATGGGTTCAACAGT
TGCCTTCCACACTGTACTGGGATACCTCTGCTCCTTAGCACTTGGTAGCTACACCATGGCCTTCTTGTCC
AGGAATTTGCCTGACACATTCAATGAAGCCAAGTTCCTGTCATTCAGCATGCAGGTATTCTTCTGTGTTT
GGATCACTTTCCTCCCTGTCTACCATAGCAGTAAGGGGAAAGTCATGGTAGTTATGGAAGTGTTCTCCAT
TTTAGCTTCCAGTGTAGCACTCTTTATATTGATTTTTGCCCCCAAGTGCTACATCATTTTGTTAAGGCCT
GAAAAAAACTCCTGTCACAATGTCAGGCACAAAAAACATTCAAGGAGGAACATCAATTTATTTACTTAA

Translation (862 aa):
MFWIFTFGLLCIPIFVCAFTDNECYVTCSDYFYREGDVTIGAFFPLHIYYTGNKVPGKYLPYSFQDYRVQ
YKFKNYQFVLALVFAIEEINRNPDLLPNTTIGYDIYNIPFTEKNILRSIFLWRTRIINPLPNCDCGQKRK
SPVVLTGPSWSASAHIGTFLQLYKIPQVTFGPFDSILNDRGQFNSLYQMSPKDTSLSLAIVFLLLQFRWS
WVGLIIPDDHRGTQILSDLRENMENHGICIAFLKIISSAWNAFSNELWKNMYKIEESSANVIVIYGDIIS
VQGLMRHIAQLLVTWKVWVLSSSWDVDTHSDYFMVESFHGSLVFSHHHDEMVEFMNFVQTVNPYKYPEDN
YLPKFWHLFFKCSFSEFNCQLLENCQPNASLDLLPRHHFDPAMNEEGYNIYNAVRAVAYSIHEMNLQKIQ
TQPYAKGEEMVFFQWQLHPFLKNTIMRSHIGRHTATHGGGNLDAQYDILNFWNFPSGLGLKVKVGTYSLS
AQQGPQFSLCEQMIQWPTGFTMTPQSVCSKSCRPGFRKAVQEGKAVCCFDCIPCADNEISNETDMYQCMK
CPESHYANSEKSHCLQKSVSFLAYDEPLGMALIITALCFSLLIAAVLVVFVKHRDTPIVKANNRTLSYIL
LLTLFICLLSSFLFIGQPNTTTCILQQTAFGILFTVALSTVLAKAITVVIAFKATVPARMVRWLMVSRAP
NFIIPICTLIQLIICGIWLVTSPPFIDQDTQTEHGHIIIVCNMGSTVAFHTVLGYLCSLALGSYTMAFLS
RNLPDTFNEAKFLSFSMQVFFCVWITFLPVYHSSKGKVMVVMEVFSILASSVALFILIFAPKCYIILLRP
EKNSCHNVRHKKHSRRNINLFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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