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Report for CCDS14900.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14900.2 Public Mus musculus 1 Lonrf2 23 108 98 CCDS HistoryNCBI Gene:381338Re-query CCDS DB by CCDS ID:14900.2Re-query CCDS DB by GeneID:381338See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 14900.1
The coding region has been updated to extend the N-terminus and this extension is supported by conservation and transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14900.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147695.8 ENSMUSP00000117600.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147695.8Link to Ensembl Protein Viewer:ENSMUSP00000117600.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000147695Re-query CCDS DB by Protein ID:ENSMUSP00000117600
Original member Current member NCBI NM_001029878.2 NP_001025049.2 Accepted alive Link to Nucleotide Sequence:NM_001029878.2Link to Protein Sequence:NP_001025049.2Re-query CCDS DB by Nucleotide ID:NM_001029878Re-query CCDS DB by Protein ID:NP_001025049Link to BLAST:NP_001025049.2

Chromosomal Locations for CCDS 14900.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38798029 38798223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38800651 38800800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38804239 38804401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38807041 38807199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38807836 38807957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38811712 38811826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38812544 38812640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38813213 38813420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38815965 38816120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38818062 38818184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38821147 38821265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38835771 38836428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGAGTCCCGAGCCCGCGCCTCCGGAGCCGCAGGGCGTGCGCCGCAGCCTCGAGGAGCCCCCGGAGGAGC
CCCAGGGACAGGGCTCCGCGGCCTTCCTCGCTGGCGACTACGAAGTGGCGGCCGAGCTCTTCCGCTCGCT
GCTGGCCGGCCTGGCGCAGCCGGAGCGCGGCCTGTGCTTGCAGCTGGGGGAAGCGCTGGCCCGCGCAGGC
CGCCTGCCCGAGGCCATCGGCGCGTTCCGCGGCGCTGCGCTGCTCGGCCCGCTGCAGCCGGGAGAGCTCT
CGGAGCTGGCGAGCGGCCTGGCGCGCGCCCTGGGCCTGCGCGAGAAACGGCCGCCTGTGGCGGCGAGGCC
CAGCGGCTGCGCGTCCGGGGCCCCGGGGCCCGTGGCGCCGCGCGACCTGCTGGGCTGTCCGCGCTGCGGG
CGGCTGCTCTACAAGCCGGTGACGTTGTCCAGCGGGCTCACGGTGTGCAAGCGCTGCGTGGAGCAGGTGC
CGGTGCGGGCGCAGGCCCGGCGCGTGAACGTGATGCTGAGCGGGCTGCTGGAGAGGTGCTTCCCTGCCGA
GTGTCGCCTGCGCAGGCTGGCGTGCCAGGCGCGGGGGCTGCATCGCCAGCAGCAGCCCGAGGCCGCGCTG
CTCAGGTGCCAGCAGGCCCTGGACATGGCCCCGGATGACAACTCATTATTGCTGCTGAGAGCTGAGTTAT
ATTTAACCATGAAGAACTATGATCAAGCCCTGCAGGATGCTGAAGCAGTTTGTCAGAGGGAACCTCTCCT
GACCAAGGGGCACCATATAAAAGCCCAGATTCTTTCTGGATTGGGAAGACATAGAGAAGTGTTAAAGGAA
TTTATCTACTGCCTTGCTTTAAACCCTGAGTGCAACTCGGCGAAGAAAGAAACACAGAAGGTAATATGTG
AGGTGTTCTTTTCAACTTCAGAAAGTGAGCACCAAACCTCAACATCTTCCACTGAAACTGGACCAGAGGC
CCTGTGTGAAGGCCAGACGAATCCCCAGTATCCTCTGGAAGAAGCAGGCGGTCACGCTAATGCAGACAAT
CCTAAGACTCCATCTGAGAAGTCAGATGCACCCGCGGATATCAACTCTTCGGTTTTATATTTTATTCTGG
GCCTCCACTGTGAAGAGGATAAAAAGGCTCTGGAAGGCATCGTCCCAGCGGCACCCAGCAGCACCTTGAA
GAGGCAGCTTCCCAGTGATGCCCAGGACGATGAGGAGCTCAAAGCGAATACCCCTGAGAAGATTCCCAAG
AAAGATGCAGACTCCCCACCTCAGAGGAATGCGAGCTCGTTAGAGGAAGAGCCAGAGTTCACAATCGATG
CGACTGACTTTGAGTGTGCGCTGTGCATGAGGCTGCTCTTTGAACCTGTCACTACACCCTGTGGACATAC
GTTTTGCCTCAAATGCCTTGAGCGTTGCCTGGACCACGCCCCTCACTGTCCACTGTGCAAGGACAAGCTT
TCTGAGCTGTTGGCAACCAGAAATTTTAATGTAACTGTTCTGACTGAAGAGCTGATATTCCGATACTTAC
CAGATGAGTTATCTGACAGGAAGAGGGTCTATGATGAAGAGATGTCAGAGCTGTCCAATCTGACCAGAGA
TGTGCCCATCTTTGTGTGTGCCATGGCCTTCCCTACGGTTCCTTGCCCTCTCCATGTGTTCGAGCCCCGC
TACCGGCTCATGATAAGGAGATGCATGGAAACTGGCACCAAGCGGTTTGGCATGTGTTTATCCGCGGAGA
ACGCAGGGATTTCAGAGTATGGGTGCATGTTGGAGATAAAGGATGTCAGGACTTTCCCTGATGGAAGCTC
TGTTGTGGATGCAATTGGGATCAGCCGCTTCAGAGTCCTGAGCCACCGCCACCGAGATGGCTACAACACG
GCGGACATCGAGTACCTGGAGGACGAGAAGGTGGAAGGTCCAGAGTTTGAAGAACTTACCGCCCTCCATG
AGTCTGTTTACCAGCAGTCTGTGTCCTGGTTTGCTTCACTCCAGGATCACATGAAGAAACAAATTCTTAG
CCATTTTGGGTCGATGCCAGACAGGGAGCCAGAGCCACAGAGCAATTCTAGTGGCCCTGCCTGGTCCTGG
TGGATTCTGGCCGTGTTGCCCTTGGAACGCAAGGCTCAACTGGCCATTCTCGGCATGGCCTCCCTGAAAG
AGCGTCTTCTGGCCATTCGACGAATATTAGTCATCATTACACGTAAGCTGAATAGTCGCCAAGAAATGGC
TAACAACACACAGAGAGATAATTGA

Translation (754 aa):
MSPEPAPPEPQGVRRSLEEPPEEPQGQGSAAFLAGDYEVAAELFRSLLAGLAQPERGLCLQLGEALARAG
RLPEAIGAFRGAALLGPLQPGELSELASGLARALGLREKRPPVAARPSGCASGAPGPVAPRDLLGCPRCG
RLLYKPVTLSSGLTVCKRCVEQVPVRAQARRVNVMLSGLLERCFPAECRLRRLACQARGLHRQQQPEAAL
LRCQQALDMAPDDNSLLLLRAELYLTMKNYDQALQDAEAVCQREPLLTKGHHIKAQILSGLGRHREVLKE
FIYCLALNPECNSAKKETQKVICEVFFSTSESEHQTSTSSTETGPEALCEGQTNPQYPLEEAGGHANADN
PKTPSEKSDAPADINSSVLYFILGLHCEEDKKALEGIVPAAPSSTLKRQLPSDAQDDEELKANTPEKIPK
KDADSPPQRNASSLEEEPEFTIDATDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKL
SELLATRNFNVTVLTEELIFRYLPDELSDRKRVYDEEMSELSNLTRDVPIFVCAMAFPTVPCPLHVFEPR
YRLMIRRCMETGTKRFGMCLSAENAGISEYGCMLEIKDVRTFPDGSSVVDAIGISRFRVLSHRHRDGYNT
ADIEYLEDEKVEGPEFEELTALHESVYQQSVSWFASLQDHMKKQILSHFGSMPDREPEPQSNSSGPAWSW
WILAVLPLERKAQLAILGMASLKERLLAIRRILVIITRKLNSRQEMANNTQRDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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