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Report for CCDS48389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48389.1 Public Mus musculus 1 Kcnt2 23 108 98 CCDS HistoryNCBI Gene:240776Re-query CCDS DB by CCDS ID:48389.1Re-query CCDS DB by GeneID:240776See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120796.7 ENSMUSP00000113333.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120796.7Link to Ensembl Protein Viewer:ENSMUSP00000113333.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120796Re-query CCDS DB by Protein ID:ENSMUSP00000113333
Original member Current member NCBI NM_001081027.3 NP_001074496.2 Accepted alive Link to Nucleotide Sequence:NM_001081027.3Link to Protein Sequence:NP_001074496.2Re-query CCDS DB by Nucleotide ID:NM_001081027Re-query CCDS DB by Protein ID:NP_001074496Link to BLAST:NP_001074496.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074496.2 1135 D3Z649-1 1135 100% 0 0

Chromosomal Locations for CCDS 48389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 140246257 140246351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140351208 140351287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140354454 140354553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140362949 140362997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140365525 140365584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140375108 140375182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140376353 140376436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140383001 140383095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140425193 140425373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140426828 140426992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140428809 140428945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140431370 140431433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140450196 140450304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140484125 140484233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140507700 140507849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140509384 140509613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140512821 140513034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140518866 140518971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140523088 140523260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140530753 140530824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140533861 140533995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140552960 140553071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140570382 140570483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140573595 140573678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140574729 140574857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140584019 140584319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140595975 140596059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140609601 140609712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGGTTGATTTGGAGAGCGAAGTGCCCCCTCTGCCTCCCAGGTACAGATTCCGGGATTTGCTGCTAGGGG
ACCAAGGCTGGCAAAATGATGACAGGGTCCAAGTTGAATTCTACATGAACGAAAACACATTTAAAGAGAG
ATTAAAACTGTTTTTCATAAAAAACCAGCGATCAAGTCTAAGAATCCGCTTGTTCAACTTTTCCCTGAAG
TTGTTAAGCTGCTTATTATATATTATCCGTGTGTTGCTTGAGAAACCGTCACAGGGAAGTGAATGGTCTC
ACATATTTTGGGTTAACCGAAGTCTACCTTTATGGGGTTTACAGGTCTCAGTGGCATTGATAAGTCTATT
TGAAACAATACTCCTTGGTTATCTCAGTTATAAGGGAAATATCTGGGAGCAGATTTTACGAATTCCATTC
ATCTTGGAAATAATCAATGCAGTCCCCTTCATCATCTCAATATTCTGGCCCACCTTAAGAAATCTATTTG
TTCCAGTTTTTCTAAATTGTTGGCTTGCCAAACATGCCTTGGAAAATATGATTAATGATCTCCATAGAGC
CATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTGATATCTACTTTACTATGCCTTATC
TTCACTTGCATTTGTGGGATTCAGCATCTAGAACGAATTGGCAAGAAGCTCAATCTCTTTGACTCCCTTT
ATTTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTCACTCCTGAAACATGGTCCTCCAAGCT
CTTTGTCGTTGCTATGATCTGCGTTGCCCTTGTAGTACTCCCTATACAGTTTGAACAGTTGGCCTATTTG
TGGATGGAGAGACAAAAGTCAGGAGGAAACTACAGTCGACACAGAGCTCAGACAGAGAAGCATGTTGTCC
TGTGTGTCAGCTCCTTGAAGATTGACTTACTTATGGATTTTCTAAATGAGTTCTATGCGCATCCAAGACT
ACAGGATTATTACGTGGTGATTTTGTGTCCCACGGAGATGGATGTGCAAGTTCGGAGAGTACTACAGATT
CCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAA
AGATGGACAATGCTGAGGCCTGTTTCATTTTGAGTAGCCGCTGCGAAGTGGATAGAACCTCATCTGATCA
CCAAACAATCTTGAGAGCATGGGCTGTGAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATATTA
AAACCAGAAAACAAATTCCACATCAAATTTGCAGATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCA
TGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTCATTACACTACTGGTTCATACCTCTAGAGG
GCAAGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAAACGAAGTCTAT
CACATCGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTTC
ATGCCCACAAAAAGTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAA
TCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAAT
TCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCA
GATTGCCTGTCCACAGCATCATTGCCAGCATGGGTACTGTGGCTATAGACTTGCAAGACACAAGCTGCAG
AGCAACAAGTGGCCCCACCCTGGCTCTTCCTTCAGAGGGAGGCAAAGAATTAAGAAGACCTAGCATTGCT
CCTGTTTTAGAGGTGGCAGATACATCATCAATTCAAACATGCGATCTCCTAAGTGACCAGTCCGAAGATG
AAACTACACCAGATGAAGAAACATCTTCAAATTTAGAGTATGCCAAAGGCTACCCACCTTATTCCCCATA
CATAGGAAGTTCACCTACTTTTTGTCACCTACTTCAAGAAAAAGTGCCATTTTGCTGCTTAAGATTAGAC
AAGAGTTGCCAGCATAACTACTATGAGGACGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTG
CAGCTGAAACAGCTGGAAATGGACTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGAA
AGAATTAAATCCCATAGTTCTGCTATTGGATAACCCGCCAGATATGCATTTTCTGGATGCAATCTGTTGG
TTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAACCTAGATGATTTGCTCAGGTGTGGAGTGACCT
TTGCTGCCAACATGGTGGTGGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATGGCAGATGC
CAAGACGATTGTGAATGTGCAGACTCTGTTCAGGTTGTTTTCAAGTCTCAGTATCATCACTGAGCTTACG
CATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGATTGTTACTCTCTCGCGCTTTCAAAACTGG
AAAAGAAAGAAAGAGAACGAGGTTCTAACTTGGCCTTTATGTTTCGACTGCCTTTTGCTGCGGGAAGAGT
GTTCAGCATCAGTATGTTAGACACCCTTCTTTATCAGTCATTTGTGAAAGATTATATGATTTCTATCACC
AGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCTATGAAAATCACTGAAGATG
ACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATCGG
GATCTACAGAACAGAATCTCAGAAACTAACGACATCTGAGTCTCAAATATCCATTAGTGTGGAAGAGTGG
GAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCCTTCACCGCAACTCAACGTCTAGTGACC
AGTCGGACCATCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGAAGGCTGAGCAGAAAAGGGCCGAA
GCACTCTGGTAAAACTGCAGAAAAAATAACTCAACAGCGACTGAACCTCTACCGGAGATCCGAAAGACAG
GAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCGACGGTGGGCTACGATGAAATGA
ATGATCATCAGAGCACCCTGTCCTACATCCTGATTAATCCGTCTCCAGACACCAGGCTTGAGCTGAATGA
TGTTGTATATTTGATCCGACCAGATCCACTGTCCTACCTTCCAAACAGTGAACCCAGTAGGAAAAACAGC
ATCTGCAATGCCGCTGTTCAAGATTCTCGGGAGGAAACTCAACTCTGA

Translation (1135 aa):
MVDLESEVPPLPPRYRFRDLLLGDQGWQNDDRVQVEFYMNENTFKERLKLFFIKNQRSSLRIRLFNFSLK
LLSCLLYIIRVLLEKPSQGSEWSHIFWVNRSLPLWGLQVSVALISLFETILLGYLSYKGNIWEQILRIPF
ILEIINAVPFIISIFWPTLRNLFVPVFLNCWLAKHALENMINDLHRAIQRTQSAMFNQVLILISTLLCLI
FTCICGIQHLERIGKKLNLFDSLYFCIVTFSTVGFGDVTPETWSSKLFVVAMICVALVVLPIQFEQLAYL
WMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDVQVRRVLQI
PMWSQRVIYLQGSALKDQDLLRAKMDNAEACFILSSRCEVDRTSSDHQTILRAWAVKDFAPNCPLYVQIL
KPENKFHIKFADHVVCEEEFKYAMLALNCICPATSTLITLLVHTSRGQEGQQSPEQWQKTYGRCSGNEVY
HIVLEESTFFAEYEGKSFTYASFHAHKKFGVCLVGVRREDNKNILLNPGPRYIMNASDICFYINITKEEN
SAFKNQDQQRKSNVSRSFYHGPSRLPVHSIIASMGTVAIDLQDTSCRATSGPTLALPSEGGKELRRPSIA
PVLEVADTSSIQTCDLLSDQSEDETTPDEETSSNLEYAKGYPPYSPYIGSSPTFCHLLQEKVPFCCLRLD
KSCQHNYYEDAKAYGFKNKLIIVAAETAGNGLYNFIVPLRAYYRPKKELNPIVLLLDNPPDMHFLDAICW
FPMVYYMVGSIDNLDDLLRCGVTFAANMVVVDKESTMSAEEDYMADAKTIVNVQTLFRLFSSLSIITELT
HPANMRFMQFRAKDCYSLALSKLEKKERERGSNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMISIT
RLLLGLDTIPGSGFLCSMKITEDDLWIRTYARLYQKLCSSTGDVPIGIYRTESQKLTTSESQISISVEEW
EDTKDVKDPGHHRSLHRNSTSSDQSDHPLLRRKSMQWARRLSRKGPKHSGKTAEKITQQRLNLYRRSERQ
ELAELVKNRMKHLGLSTVGYDEMNDHQSTLSYILINPSPDTRLELNDVVYLIRPDPLSYLPNSEPSRKNS
ICNAAVQDSREETQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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