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Report for CCDS89423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89423.1 Public Mus musculus 19 Spmip5 23 108 98 CCDS HistoryNCBI Gene:67507Re-query CCDS DB by CCDS ID:89423.1Re-query CCDS DB by GeneID:67507See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166692.1 ENSMUSP00000126241.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166692.1Link to Ensembl Protein Viewer:ENSMUSP00000126241.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166692Re-query CCDS DB by Protein ID:ENSMUSP00000126241
Original member Current member NCBI NM_001368688.1 NP_001355617.1 Accepted alive Link to Nucleotide Sequence:NM_001368688.1Link to Protein Sequence:NP_001355617.1Re-query CCDS DB by Nucleotide ID:NM_001368688Re-query CCDS DB by Protein ID:NP_001355617Link to BLAST:NP_001355617.1
Original member Current member NCBI NM_001368689.1 NP_001355618.1 Accepted alive Link to Nucleotide Sequence:NM_001368689.1Link to Protein Sequence:NP_001355618.1Re-query CCDS DB by Nucleotide ID:NM_001368689Re-query CCDS DB by Protein ID:NP_001355618Link to BLAST:NP_001355618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355617.1 229 Q9CQT6 229 100% 0 0
NP_001355618.1 229 Q9CQT6 229 100% 0 0

Chromosomal Locations for CCDS 89423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58785996 58786126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58786214 58786311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58787535 58787721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58789079 58789297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58792736 58792790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCGGCTTCATACCATGGC
TCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCA
GAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGT
TCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGGAATGCA
AAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGT
CACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTG
GTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCAAACATACGATGTGAGGGCTGCCCAGCCTC
TTAGCCCTTCTTCAAAAATCTTGCAGCTGCAAGGTCTCTCACCCGCATTTCCAGAATTCTCTGGGCCAGG
TCAAACACCCCCAAGTGAGGACCCCCAAGCTCCCAGGCCCTGTGGTTGTGCTCAGTGGTCCAGCCAGTCA
TGCAGCAGGAATGTGTATGGGGAGCCACCATCCTTAGCAAAGGCTTTTGCCGAGAGCTAG

Translation (229 aa):
MESPKTFMRKLPITPGYCGFIPWLSCQESSSEDRMNPCVKAFQERTQRYKEDQQGLNCSVANTPPLKPIC
SEDTVLWVLHEYAKKYHPLTLECKNEKKPLQEPPIPGWAGYLPRARVTEFGYATRYTIMAKKCYKDFLDL
VEQAKRAQLKPYEQTYDVRAAQPLSPSSKILQLQGLSPAFPEFSGPGQTPPSEDPQAPRPCGCAQWSSQS
CSRNVYGEPPSLAKAFAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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