NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40370.1 Public Mus musculus 8 Slc25a42 23 108 98 CCDS HistoryNCBI Gene:73095Re-query CCDS DB by CCDS ID:40370.1Re-query CCDS DB by GeneID:73095See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063788.7 ENSMUSP00000065903.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063788.7Link to Ensembl Protein Viewer:ENSMUSP00000065903.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063788Re-query CCDS DB by Protein ID:ENSMUSP00000065903
Original member Current member EBI ENSMUST00000110127.7 ENSMUSP00000105754.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110127.7Link to Ensembl Protein Viewer:ENSMUSP00000105754.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110127Re-query CCDS DB by Protein ID:ENSMUSP00000105754
Original member Current member NCBI NM_001007570.2 NP_001007571.1 Accepted alive Link to Nucleotide Sequence:NM_001007570.2Link to Protein Sequence:NP_001007571.1Re-query CCDS DB by Nucleotide ID:NM_001007570Re-query CCDS DB by Protein ID:NP_001007571Link to BLAST:NP_001007571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007571.1 318 Q8R0Y8 318 100% 0 0

Chromosomal Locations for CCDS 40370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70186469 70186776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70188300 70188451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70188833 70188949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70189411 70189577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70190063 70190088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70191861 70191966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70194124 70194204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGGTAATGGTGTGCAGGAAGGCTCGGTGCGCCTGCGAGAGGATGCTGAAGCCGTCCTGGCTGGGGCCG
TCTCCTCGAAGAGAGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGAGCCCTGGCTGGTGCACTTGC
CAAGACAGCAGTAGCCCCCCTGGACCGGACCAAGATCATCTTCCAAGTGTCTTCAAAAAGATTTTCTGCC
AAGGAGGCCTTCCGGCTCCTCTACTTCACCTACCTCAATGAGGGCTTCCTCAGCCTTTGGCGTGGGAACT
CAGCCACCATGGTGCGAGTGATTCCTTATGCAGCCATCCAGTTCAGCGCACACGAAGAATACAAGCGCAT
CCTGGGCCACTACTATGGCTTTCGTGGAGAAGCCCTGCCCCCATGGCCACGCCTCCTGGCTGGCGCCTTG
GCAGGAACCACTGCGGCTTCCCTCACGTACCCTTTGGACCTGGTTAGAGCAAGGATGGCTGTGACGCCTA
AGGAAATGTACAGCAACATCTTTCATGTCTTCATCCGAATCTCGAGAGAGGAAGGACTGAAGACCCTCTA
TTTCGGGTTCACCCCCACTGTGCTGGGTGTCATTCCCTATGCGGGACTCAGCTTCTTCACGTACGAGTCA
CTGAAGAGCCTGCACCGAGAGTACAGTGGCCGCCCGCAGCCCTACCCCTTTGAGCGCATGGTCTTCGGGG
CCTGTGCTGGCCTTATCGGGCAATCGGCCTCCTACCCTCTGGACGTGGTGCGGCGGCGCATGCAGACAGC
AGGTGTCACGGGCCACCAGCACGGCTCCATCCTGAGCACACTACGCTCCATTGTACGTGAGGAGGGCGCG
GTGCGGGGCCTCTACAAGGGCCTGAGCATGAACTGGCTGAAGGGCCCAATTGCCGTGGGGATCAGCTTCA
CCACTTTCGACCTCATGCAGATCCTGCTGCGCCGGCTGCAGAGCTAG

Translation (318 aa):
MGNGVQEGSVRLREDAEAVLAGAVSSKRDHRQVLSSLLSGALAGALAKTAVAPLDRTKIIFQVSSKRFSA
KEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAGAL
AGTTAASLTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYES
LKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHQHGSILSTLRSIVREEGA
VRGLYKGLSMNWLKGPIAVGISFTTFDLMQILLRRLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH