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Report for CCDS37998.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37998.2 Public Mus musculus 19 Pax2 23 108 98 CCDS HistoryNCBI Gene:18504Re-query CCDS DB by CCDS ID:37998.2Re-query CCDS DB by GeneID:18504See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 37998.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37998.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174490.8 ENSMUSP00000134661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174490.8Link to Ensembl Protein Viewer:ENSMUSP00000134661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174490Re-query CCDS DB by Protein ID:ENSMUSP00000134661
Original member Current member NCBI NM_011037.5 NP_035167.4 Accepted alive Link to Nucleotide Sequence:NM_011037.5Link to Protein Sequence:NP_035167.4Re-query CCDS DB by Nucleotide ID:NM_011037Re-query CCDS DB by Protein ID:NP_035167Link to BLAST:NP_035167.4

Chromosomal Locations for CCDS 37998.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44757394 44757436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44760875 44761043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44761688 44761885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44788777 44788862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44790683 44790802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44815908 44816083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44818426 44818552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44833166 44833267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44835391 44835477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44835951 44836027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGGATATGCACTGCAAAGCAGACCCCTTCTCCGCGATGCACCCAGGGCACGGGGGTGTGAACCAGCTCG
GGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCA
GGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGC
AGGTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCA
AAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAG
GCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAGGATCATCCGG
ACCAAAGTTCAGCAGCCTTTCCACCCAACGCCGGATGGGGCAGGGACAGGAGTGACTGCCCCCGGCCACA
CCATCGTTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCAT
CAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAGATGTGTCTGAGGGC
TCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCA
CCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATC
AGAGCACATCAAATCAGAACAGGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTC
AAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCG
TTGTGACCGGTCGTGATATGACGAGCACCACTCTACCTGGTTACCCCCCTCATGTGCCCCCCACTGGCCA
GGGAAGCTACCCTACCTCCACCCTGGCAGGAATGGTGCCTGGGAGCGAGTTCTCAGGCAACCCATACAGC
CATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAAGTTCCCCTTATT
ATTATAGTGCCGCCCCCCGGGGCTCCGCCCCTGCCGCTGCTGCCGCTGCCTATGACCGCCACTAG

Translation (394 aa):
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG
RYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR
TKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKREEDVSEG
SVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEV
KSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYS
HPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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