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Report for CCDS51265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51265.1 Public Mus musculus 4 Skint8 23 108 98 CCDS HistoryNCBI Gene:639774Re-query CCDS DB by CCDS ID:51265.1Re-query CCDS DB by GeneID:639774See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165046.1 ENSMUSP00000133268.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165046.1Link to Ensembl Protein Viewer:ENSMUSP00000133268.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165046Re-query CCDS DB by Protein ID:ENSMUSP00000133268
Original member Current member NCBI NM_001100466.1 NP_001093936.2 Accepted alive Link to Nucleotide Sequence:NM_001100466.1Link to Protein Sequence:NP_001093936.2Re-query CCDS DB by Nucleotide ID:NM_001100466Re-query CCDS DB by Protein ID:NP_001093936Link to BLAST:NP_001093936.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093936.2 398 A7XV07-1 398 100% 0 0

Chromosomal Locations for CCDS 51265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 111927179 111927254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111928435 111928782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111936839 111937120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111938837 111938947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111939518 111939640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111950059 111950315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGATGAAGCCTGAGTTCTCTCACTTTTTTGGATTCTGTGTGTACTTTCTTTTTCTGCAAGTGATGGCGT
CTTCAGAGAAACTGAGGGTAACCACTCCCACAAGACACCTGTTAGCTAGAGTAGGAGGCCAGGCTGAGCT
CAGCTGCCAGGTGATCCCACCACACAGTGTGATGCATATGGAGGTACGCTGGTTCAGGAGTGGCCATTCC
CAACCTGTTTACCTATACAGAGGTGGCCATAAAATGAGTGAAGAAGCTGCTCCTGAATATGCAAATCGTA
CAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTTATAATATAAACATTTTGGA
TGATGGACCTTACCAATGTTCATTTAATGATAGTGGCTTTATTGATGTGGCTATCATGAACCTCAACGTG
ACAGCAGTTGGATTGGAGACAGAGATACATGTTCAGGCCCCTGATGCTGATGGAGTCATGGTGGAATGTA
ATACAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGATAGCAAAGGGGCAACACTTCCACACTC
ATTAAAATCATATTCACAGGATGAAGCAAGATTTTTCCACATGAAGATGACCCTTCTCCTCACAAACATG
TCACACGGCAGCATCATTTGCTGTATTTCCAACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTC
TAGCAAATGAACTTTTCAATCAAGACTACTTATGGGTAGGAATTTTTCCTTTCAGTGTGCTTTCATTAAT
TCTCTTTGGAGTTCTGCCATTCATCAACTCCTTTTTCAGGAGTCAAGGGTGTGCATCTGGATGCCTATCC
AAATGTCTTCCTGTGGTGACCTCCTGGCCTGTTCAAATAGTGCATTTCTTAGTCTGTTCTGGAGTACTCT
TTGCTGTGTATTTACCTCACCGGTACAGAGTCTCTCTTTCAGATCCTCAGTTTCCCTTATACAACAACTG
GATAACTGAATTGCTAATTGTGATACTTTTCCTGACAATATGTTTTGTCTTACCAATCACTGTCTTATTA
TTAATAAAACTTTCACCCACATGTCTGGCTAAATGGGAGAAGAACAAAGATGACATCATGGATAGCCAAC
TGGGACTGGGAAAAGCCCGTGAAGCCTCAACCCTATATGAAGAACAATCAAGAAAAAGCTGGGAGCAGGA
GAAGTGA

Translation (398 aa):
MMKPEFSHFFGFCVYFLFLQVMASSEKLRVTTPTRHLLARVGGQAELSCQVIPPHSVMHMEVRWFRSGHS
QPVYLYRGGHKMSEEAAPEYANRTEFVKEAIGEGKVSLRIYNINILDDGPYQCSFNDSGFIDVAIMNLNV
TAVGLETEIHVQAPDADGVMVECNTGGWFPRPQMEWRDSKGATLPHSLKSYSQDEARFFHMKMTLLLTNM
SHGSIICCISNPVTGEEKQTSIILANELFNQDYLWVGIFPFSVLSLILFGVLPFINSFFRSQGCASGCLS
KCLPVVTSWPVQIVHFLVCSGVLFAVYLPHRYRVSLSDPQFPLYNNWITELLIVILFLTICFVLPITVLL
LIKLSPTCLAKWEKNKDDIMDSQLGLGKAREASTLYEEQSRKSWEQEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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