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Report for CCDS28227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28227.1 Public Mus musculus 16 Tomm70a 23 108 98 CCDS HistoryNCBI Gene:28185Re-query CCDS DB by CCDS ID:28227.1Re-query CCDS DB by GeneID:28185See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166897.2 ENSMUSP00000129186.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166897.2Link to Ensembl Protein Viewer:ENSMUSP00000129186.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166897Re-query CCDS DB by Protein ID:ENSMUSP00000129186
Original member Current member NCBI NM_138599.5 NP_613065.2 Accepted alive Link to Nucleotide Sequence:NM_138599.5Link to Protein Sequence:NP_613065.2Re-query CCDS DB by Nucleotide ID:NM_138599Re-query CCDS DB by Protein ID:NP_613065Link to BLAST:NP_613065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613065.2 611 Q9CZW5 611 100% 0 0

Chromosomal Locations for CCDS 28227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57121862 57122194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57133077 57133250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57134653 57134779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57136698 57136807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57138030 57138178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57140579 57140786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57142721 57142855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57144691 57144798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57146030 57146146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57147733 57147830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57149820 57149942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57152583 57152736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGCCGCCTCTAAGCCCATAGAGGCGGCGATGGCGGCGGCTGCTGCGCCCGGTTCTGGAAATGGAGTGG
GCGGTGGCGGTGGGACTGCGGGCCCCGGCTCGGGCGCGGGGACCCTGCCGCGATGGCACGTGGCGCTGGC
CATCGGGGCGCCCCTGTTGCTGGGTGCTGGGGCTATGTACCTGTGGAGCCGAAGGCGGAGGCGCCGGGAA
GCGGGAGGCCGGGGCGACGCCAGCGGCCTGAAGCGCAACAGTGAACGGAAGACCCCCGAGGGCAGGGCCA
GTCCGGCCCTGGGCAGTGGCCACCACGACGGTTCTGGGGACTCCCTGGAAATGAGCTCTCTGGACAGAGC
GCAAGCAGCCAAAAACAAAGGCAACAAATATTTCAAAGCAGGAAAATACGAGCAAGCTATTCAGTGCTAC
ACTGAGGCTATTAGTTTGTGCCCTACTGAGAAGAATGTAGACCTTTCTACATTTTATCAGAACAGAGCTG
CTGCCTTTGAACAATTGCAAAAATGGAAAGAAGTGGCCCAAGATTGTACAAAGGCTGTTGAACTTAATCC
CAAATATGTGAAAGCCCTCTTTAGACGTGCAAAAGCCCATGAGAAGCTAGACAATAAGAAGGAGTGTTTA
GAAGACGTCACTGCTGTGTGTATATTAGAAGGGTTTCAAAATGAGCAGAGCATGCTGTTAGCTGATAAAG
TTCTTAAACTTCTTGGGAAAGAGAATGCCAAAGAAAAATACAAGAACCGTGAACCTCTGATGCCATCTCC
ACAGTTTATTAAATCTTACTTCAGTTCTTTCACCGATGATATAATTTCTCAACCAATGCTTAAGGGAGAG
AAGTCTGATGAAGATAAAGACAAGGAGGGAGAGGCTTTAGAAGTGAAAGAAAATTCTGGGTATTTGAAAG
CTAAACAATATATGGAAGAAGAAAACTATGACAAAATCATAAGTGAATGTTCAAAGGAAATAGATGCTCA
AGGCAAATACATGGCAGAAGCATTACTTCTGCGAGCCACCTTCTACCTACTTATTGGCAGTGCCAACGCG
GCCAAGCCTGACTTAGATAAGGTCATCAGTTTGAAGGAAGCTAATGTGAAGCTTCGAGCAAATGCCCTTA
TCAAGAGAGGCACCATGTGCATGCAGCAGCAACAACCTATGCTGTCTACTCAGGACTTCAACATGGCTGC
CGAGATCGATCCTATGAACTCAGACGTTTATCACCACCGAGGACAGCTGAAAATTCTGCTGGATCTGGTT
GAAGAAGCAGTGGCGGATTTTGATGCATGTATCAGATTAAGACCAAAGTTTGCTTTGGCGCAGGCTCAGA
AGTGTTTTGCATTGTATCGCCAGGCATATACAGCAAACAATTCTTCGCAAGTCCAGGCAGCTATGAAAGG
TTTTGAAGAGATCATAAAGAAATTTCCAAGATGTGCTGAAGGCTATGCACTTTATGCCCAGGCATTAACA
GATCAACAACAGTTTGGTAAAGCTGATGAAATGTATGATAAGTGTATTGATTTGGAACCAGATAATGCTA
CAACTTATGTTCATAAAGGTTTACTTCAACTTCAGTGGAAGCAAGATTTGGATAAAGGTTTGGAGCTTAT
CAGCAAGGCTATTGAAATTGACAACAAATGTGACTTTGCATATGAGACCATGGGGACTATTGAAGTGCAG
AGAGGAAACATGGAGAAAGCCATTGACATGTTCAACAAAGCTATCAACTTGGCCAAGTCGGAAATGGAGA
TGGCTCATCTGTATTCACTTTGTGATGCTGCCCATGCCCAGACAGAAGTAGCAAAGAAATACGGATTAAA
ACCGCCGACATTATAA

Translation (611 aa):
MAASKPIEAAMAAAAAPGSGNGVGGGGGTAGPGSGAGTLPRWHVALAIGAPLLLGAGAMYLWSRRRRRRE
AGGRGDASGLKRNSERKTPEGRASPALGSGHHDGSGDSLEMSSLDRAQAAKNKGNKYFKAGKYEQAIQCY
TEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECL
EDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPMLKGE
KSDEDKDKEGEALEVKENSGYLKAKQYMEEENYDKIISECSKEIDAQGKYMAEALLLRATFYLLIGSANA
AKPDLDKVISLKEANVKLRANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLV
EEAVADFDACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEIIKKFPRCAEGYALYAQALT
DQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDLDKGLELISKAIEIDNKCDFAYETMGTIEVQ
RGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQTEVAKKYGLKPPTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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