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Report for CCDS87854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87854.1 Public Mus musculus 1 Agfg1 23 108 98 CCDS HistoryNCBI Gene:15463Re-query CCDS DB by CCDS ID:87854.1Re-query CCDS DB by GeneID:15463See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186302.6 ENSMUSP00000140785.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186302.6Link to Ensembl Protein Viewer:ENSMUSP00000140785.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186302Re-query CCDS DB by Protein ID:ENSMUSP00000140785
Original member Current member NCBI NM_001368850.1 NP_001355779.1 Accepted alive Link to Nucleotide Sequence:NM_001368850.1Link to Protein Sequence:NP_001355779.1Re-query CCDS DB by Nucleotide ID:NM_001368850Re-query CCDS DB by Protein ID:NP_001355779Link to BLAST:NP_001355779.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355779.1 561 Q8K2K6-4 561 100% 0 0

Chromosomal Locations for CCDS 87854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 82839723 82839889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82858356 82858449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82870685 82870800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82875288 82875450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82876171 82876324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82880008 82880127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82882228 82882437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82883181 82883361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82886111 82886187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82886375 82886467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82893424 82893582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82894476 82894567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 82894999 82895058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGCGGCCAGCGCGAAGCGGAAGCAGGAGGAGAAGCACCTGAAGATGCTGCGGGACATGACGGGGCTGC
CGCACAACCGCAAGTGTTTCGACTGCGACCAGCGCGGCCCCACCTACGTGAACATGACGGTCGGCTCGTT
CGTGTGCACCTCCTGCTCCGGCAGCCTGAGAGGGTTAAATCCACCTCACAGGGTGAAATCTATCTCCATG
ACAACATTTACACAACAGGAAATTGAATTCCTACAAAAACATGGAAATGAAGTCTGCAAACAGATATGGC
TAGGATTATTTGATGACAGATCTTCAGCAATTCCAGACTTCAGGGATCCACAAAAAGTGAAAGAGTTTCT
ACAAGAGAAATATGAAAAGAAAAGATGGTATGTTCCGCCAGAGCAAGCCAAAGTGGTGGCCTCGGTTCAT
GCGTCTATTTCAGGGTCTTCTGCCAGCAGCACAAGCAGCACCCCGGAGGTCAAGCCCCTGAAATCCCTGT
TGGGAGAGTCTGCACCCGCACTGCACCTAAATAAGGGCACACCTAGTCAGTCCCCAGTTGTAGGTCGCTC
TCAAGGGCAGCAGCAGGAGAAGAAGCAGTTTGACCTTTTGAGTGATCTTGGCTCAGACATCTTTGCTGCT
CCAGCTCCTCAGTCAACAGCTACAGCCAATTTTGCTAACTTTGCACACTTTAACAGTCATGCAGCTCAGA
ATTCTGCAAATGCAGATTTTGCAAACTTTGATGCATTTGGACAGTCTAGTGGTTCGAGTAATTTTGGAGG
TTTCCCCACAGCAAGTCACTCTTCTTTTCAGCCCCAGACTACAGGTGGAAGTGCTGGATCAGTAAATGCT
AATTTTGCTCATTTTGATAACTTCCCTAAATCCTCCAGTGCTGATTTTGGAACCTTCAGTACATCCCAGA
GTCATCAGACAGCATCAACTGTTAGTAAAGTTTCAACAAACAAAGCTGGTTTACAGACAGCAGACAAATA
TGCGGCACTTGCTAATTTAGACAATATCTTCAGTGCTGGGCAAGGAGGTGATCAAGGGAGTGGTTTTGGG
ACCACGGGTAAAGCTCCTGTTGGTTCTGTGGTTTCAGTTCCCAGTCATTCAAGTGCATCTTCAGACAAGT
ATGCAGCCCTGGCAGAGTTAGACAGCGTGTTCAGCTCTGCAGCCACCTCCAGTAATGCGTACACGCCCAC
CAGTAATGCTAGCAGCAGTGTCTTTGGAACAGTGCCTGTGGGTGCCTCTGCTCAGACACAACCTGCTTCA
AGTGGTCCTGCTCCGTTTGGGGCTACGCCTTCTACGAATCCATTTGTTGCTGCTACTGGTCCTTCTGCGG
CATCGTCTACAAACCCATTTCAGACCAATGCCAGAGGAGCAACAGCGGCAACCTTTGGCACCGCATCTAT
GAGTATGCCAGCAGGATTTGGCACTCCTGCCCAGTATAGTCTCCCTACCAGCTTTAGTGGCAGTTTCCAG
CAGCCTGCCTTCCCAGCCCAAGCAGCTTTCCCTCAGCAGACAGCCTTTTCTCAACAGCCCAATGGTGCAG
GTTTCGCCACGTTTGGACAAACAAAACCAGTGGTAACCCCTTTCGGTCAAGTAGCAGCTGCTGGAGTGTC
TAGTAATCCTTTTATGACTGGTGCGCCGACAGGACAACTTCCAACAGGAAGCTCATCCACCAACCCTTTC
TTATAG

Translation (561 aa):
MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISM
TTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVH
ASISGSSASSTSSTPEVKPLKSLLGESAPALHLNKGTPSQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAA
PAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSSFQPQTTGGSAGSVNA
NFAHFDNFPKSSSADFGTFSTSQSHQTASTVSKVSTNKAGLQTADKYAALANLDNIFSAGQGGDQGSGFG
TTGKAPVGSVVSVPSHSSASSDKYAALAELDSVFSSAATSSNAYTPTSNASSSVFGTVPVGASAQTQPAS
SGPAPFGATPSTNPFVAATGPSAASSTNPFQTNARGATAATFGTASMSMPAGFGTPAQYSLPTSFSGSFQ
QPAFPAQAAFPQQTAFSQQPNGAGFATFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQLPTGSSSTNPF
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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