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Report for CCDS36458.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36458.2 Public Mus musculus 12 Mia2 23 108 98 CCDS HistoryNCBI Gene:338320Re-query CCDS DB by CCDS ID:36458.2Re-query CCDS DB by GeneID:338320See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 36458.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 17 aa longer.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36458.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069430.14 ENSMUSP00000070572.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069430.14Link to Ensembl Protein Viewer:ENSMUSP00000070572.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069430Re-query CCDS DB by Protein ID:ENSMUSP00000070572
Original member Current member NCBI NM_146034.5 NP_666146.3 Accepted alive Link to Nucleotide Sequence:NM_146034.5Link to Protein Sequence:NP_666146.3Re-query CCDS DB by Nucleotide ID:NM_146034Re-query CCDS DB by Protein ID:NP_666146Link to BLAST:NP_666146.3

Chromosomal Locations for CCDS 36458.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 59129870 59129896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59136064 59136195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137581 59137602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137698 59137786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59144699 59144770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146336 59146362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146847 59146957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59147852 59147923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59149464 59149568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59154356 59154478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59158253 59158367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59159591 59159637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59160176 59160266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59162881 59163019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59168934 59169035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170258 59170318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170957 59170992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59172525 59172592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59174106 59174188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59176331 59176459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59179850 59180008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59184187 59184303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59185729 59185787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59188311 59188545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59189636 59189799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGGAATTGGAAGGTCTGGGTGAGGAGGTTGTGGCAGCATTGCCTGAAGATATGAGAGCAGACTTTAATC
CCAGTGGTTTTTCGTTGGAATTGGCAGTATGTGTGCTTTCCGTTGGACTGCTTGCCGTGGTCTTGTTTCT
GTGGCGAGGCTTCCGATCAATTCGAAGCCGATTTTATGTGGGGAGAGAAAAGAAACTTGCTCTTGAGCTT
TCTGCACTAATTGAAGAAAAATGTAAACTGCTTGACAAAGTCAGCATTGTTCAAAAGGAGTATGAAGGCT
TAGAGTCATCTTTAAAGGAGGCCAGCTTTGAGAAGGAGTCAACAGAAGCACAAAGTTTGGAGTTTGTTGA
AGGATCACAAATATCAGAGGCCACCTATGAAAATCTGGAACAATCCAAATCTAAACTTGAAGATGAAATA
CTACTCCTAGAGGAAAAGCTGGAAGAAGAGCGAGCTAAACATTCTGAACAAGACGAGCTGATGGCTGATA
TTTCAAAAAGGATACAGTCCCTAGAAGATGAATCAAAATCTCTCAAATCGCAAGTAGCTGAAGCCAAAAC
AACCTTTAGAATATTTGAAATCAATGAAGAGCGACTCAAGGGAGCAATAAAAGATGCCTTGAATGAAAAT
TCTCAGCTTCAGGAAAGCCAGAAACAGCTTTTACAGGAAACTGAAATGATGAAAGAACAAGTGAATGATC
TCGATAAACAGAAAGTGGCATTGGAAGAGTCCAGAGCACAGGCGGAACAAGCTCTGAGTGAGAAGGAGAG
TCAGATTGAGACTCTGGTCACGAGCCTGCTAAAGATGAAGGATTGGGCTGCTGTGCTTGGAGAAGCAGAT
GATGGGAATCTGGACTTGGACATGAAGAGTGGCCTAGAAAACACTGCTGCCTTAGATAATCAGCCAAAGG
GCGCTTTGAAGAAGCTGATTTATGCAGCTAAGTTAAATGCTTCTTTAAAAGCCTTGGAAGGAGAACGAAA
TCAAGTTTACACTCAGTTATCTGAAGTGGATCAAGTAAAAGAAGACCTTACAGAGCATATCAAAAGTCTT
GAGTCTAAACAAGCATCTTTGCAGTCAGAAAAGACAGAGTTTGAAAGTGAGAGCCAGAAACTTCAGCAGA
AACTGAAAGTGATAACCGAGCTGTACCAAGAAAATGAAATGAAACTTCACAGGAAATTAACAGTAGAAGA
AAATTACCGATTAGAGAAAGAAGAAAAACTTTCCAAAGTAGATGAGAAAATCAGCCATGCGACCGAGGAG
CTGGAGACCTGCAGGCAGCGTGCCAAGGATCTTGAAGAAGAGCTGGAGAGAACAATTCATTCTTACCAGG
GGCAGGTTATTTCTCATGAAAAAAAAGCACATGATAATTGGCTGGCAGCTCGGACTCTTGAAAGAAATCT
CAATGATTTAAGAAAAGAAAATGCCCACAACAGACAAAAATTAACTGAAACAGAGTTTAAATTTGAACTT
TTAGAAAAAGATCCTTATGCACTTGATGTTCCAAACACAGCATTTGGCAGAGAGCACTCCCCATATGGTC
CCTCACCATTGGGCCGACCTCCATCTGAAACGAGAGCTTTTCTCTCTCCTCCAACTTTGTTGGAGGGTCC
ACTAAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCACGAGGCCCTGAGAACCTTCTGGAC
CATCAGATGAACACTGAAAGAGGAGAGTCAAGCTATGACAGATTATCTGATGCTCCCAGAGCACCTTCCG
ACAGGTCCCTGTCACCTCCGTGGGAACAAGATCGAAGGATGACAGCCCATCCGCCACCAGGCCAACCATA
TTCTGATCCAGCTCTACAAAGGCAAGATCGGTTTTATCCTAATTCTGGTAGACTCTCTGGACCAGCAGAA
CTCAGAAGTTATAATATGCCCTCTTTGGATAAAGTGGATGGGCCAGTACCCTCAGAAATGGAGTCCAGTG
GAAACGGTACCAAAGATAATCTTGGTAACTCTAATGTGCCTGATTCTCCTATCCCTGCTGAATGCGAAGC
AGCTGGCCGTGGCTTCTTCCCTCCACCCTTTCCTCCAGTCAGAGACCCATTGTTTCCAGTGGATCCAAGG
AGCCAGTTCATGAGAAGGGGCCCCTCTTTCCCCCCACCTCCTCCAGGAAGCATCTATGCAGCTCCTCGAG
ATTATTTTCCACCAAGGGACTTCCCTGGCCCACCACTTCCTCCGTTCCCAGGGAGAACTGTGTACGCACC
GAGGGGCTTTCCACCTTACCTTCCCCCCAGAGCTGGGTTCTTCCCCCCACCCCCACATCCTGAAAGTAGA
AGTGAGCTCCCCCCAGACTTGATTCCGCCTTCAAAAGAGCCTGCAGCTGACCCTCCAGAAACACAGGAGG
CCTGA

Translation (794 aa):
MELEGLGEEVVAALPEDMRADFNPSGFSLELAVCVLSVGLLAVVLFLWRGFRSIRSRFYVGREKKLALEL
SALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEI
LLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNEN
SQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEAD
DGNLDLDMKSGLENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSL
ESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEE
LETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFEL
LEKDPYALDVPNTAFGREHSPYGPSPLGRPPSETRAFLSPPTLLEGPLRLSPLLPGGGGRGSRGPENLLD
HQMNTERGESSYDRLSDAPRAPSDRSLSPPWEQDRRMTAHPPPGQPYSDPALQRQDRFYPNSGRLSGPAE
LRSYNMPSLDKVDGPVPSEMESSGNGTKDNLGNSNVPDSPIPAECEAAGRGFFPPPFPPVRDPLFPVDPR
SQFMRRGPSFPPPPPGSIYAAPRDYFPPRDFPGPPLPPFPGRTVYAPRGFPPYLPPRAGFFPPPPHPESR
SELPPDLIPPSKEPAADPPETQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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