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Report for CCDS27601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27601.1 Public Mus musculus 15 Apol10a 23 108 98 CCDS HistoryNCBI Gene:245282Re-query CCDS DB by CCDS ID:27601.1Re-query CCDS DB by GeneID:245282See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060551.8 ENSMUSP00000060650.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060551.8Link to Ensembl Protein Viewer:ENSMUSP00000060650.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060551Re-query CCDS DB by Protein ID:ENSMUSP00000060650
Original member Current member NCBI NM_177744.4 NP_808412.1 Accepted alive Link to Nucleotide Sequence:NM_177744.4Link to Protein Sequence:NP_808412.1Re-query CCDS DB by Nucleotide ID:NM_177744Re-query CCDS DB by Protein ID:NP_808412Link to BLAST:NP_808412.1

Chromosomal Locations for CCDS 27601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77481260 77481296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77484840 77484966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77488330 77489122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGATTGGAATGAGATCTTAGAGGACATTAGGAAAGTGGAACGTCGCATTGTTGAAAAATTCATTGAAG
ATCTCACAGAAAATTTCTTAAGAACAGATCTGAGGAGCCTTATAACTGAAGATGGAGCCTGGAATGGATT
TTTGGAAACAGCAGAGTTGTCAAGTGAGGAGAAAGCTGCACTGCGTGATGCTCTGAAGGAGAGTTCAGCA
CAGAAGCCCTCTGGTGAAAATGACAGACCTGAAAGGAAGCCACAGAAAGAGCAGATTTTGCGAGAGGTTC
CTCAGTTGAAGAAGAAACTTGAGGTCCATATCAGTAAGCTCCGAGAGCTGGCTGACAAACTTGACCTGGT
GCACAAGTGCTGCACCATCTCCAATGTGGTGTCCCTCACTCTTAGTGCTGCTTCAGGAGTCCTCAAGCTC
CTTGATTTTGTTCTGTCACAGATCTATGGAATGCCCAGGCGAGCACTCTCAGCAACCTCTGAGGGTCTGG
GAATGGCATCAGATATGATTAATATTACTACCACCATTGTGGGAGAAAGTTTCAGACAGTCATATGAATC
AGAAGCCAGACGCCTGGTTGGAGCCAGCATAAATATACTTTACGAGATTATAAATATCACTCCTATGATC
ACAGTCAAGCTTTATTATACAGTTAAGGATTTAGTTGAAGCCTTCAAAACCCTCACGGGTCAGATCCGAG
CCATCAGGACAGCCATATCCAACTCTGACCTTGGAACACAGGCCAGGAACCCTGCATCCACTGGAAGAAG
CTCTGGACAGGGTGTCCCCCAGATGATCAGTAGAGCCAGGATTAGAGAAATAGGGCTTACAGTTCCGTTC
CTTGAACAGGATCTTCGGGACCTTGCGCAACAATTCGAGGTTTTGAAGGATGGGGCAAAAACAGAGTCAG
GTGGAGCACTGCGGGACCTGGCTCACAAGCTGGAGGAGAACCTTTAG

Translation (318 aa):
MDWNEILEDIRKVERRIVEKFIEDLTENFLRTDLRSLITEDGAWNGFLETAELSSEEKAALRDALKESSA
QKPSGENDRPERKPQKEQILREVPQLKKKLEVHISKLRELADKLDLVHKCCTISNVVSLTLSAASGVLKL
LDFVLSQIYGMPRRALSATSEGLGMASDMINITTTIVGESFRQSYESEARRLVGASINILYEIINITPMI
TVKLYYTVKDLVEAFKTLTGQIRAIRTAISNSDLGTQARNPASTGRSSGQGVPQMISRARIREIGLTVPF
LEQDLRDLAQQFEVLKDGAKTESGGALRDLAHKLEENL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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