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Report for CCDS38125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38125.1 Public Mus musculus 2 Galnt5 23 108 98 CCDS HistoryNCBI Gene:241391Re-query CCDS DB by CCDS ID:38125.1Re-query CCDS DB by GeneID:241391See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112616.7 ENSMUSP00000108235.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112616.7Link to Ensembl Protein Viewer:ENSMUSP00000108235.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112616Re-query CCDS DB by Protein ID:ENSMUSP00000108235
Original member Current member EBI ENSMUST00000166729.1 ENSMUSP00000131362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166729.1Link to Ensembl Protein Viewer:ENSMUSP00000131362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166729Re-query CCDS DB by Protein ID:ENSMUSP00000131362
Original member Current member NCBI NM_172855.3 NP_766443.2 Accepted alive Link to Nucleotide Sequence:NM_172855.3Link to Protein Sequence:NP_766443.2Re-query CCDS DB by Nucleotide ID:NM_172855Re-query CCDS DB by Protein ID:NP_766443Link to BLAST:NP_766443.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766443.2 930 Q8C102 930 100% 0 0

Chromosomal Locations for CCDS 38125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 57998390 57999813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58014851 58015017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58017118 58017237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58024586 58024721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58025281 58025400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58026044 58026161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58027837 58028160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58032107 58032187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58035199 58035360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58038812 58038952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGAACAAGATCCGAAAGTTTTTCCGAGGAAGTGGGCGAGTCTTGGCATTTATATTTGCAGCGTCTGTCA
TCTGGTTGCTCTTTGACATGGCAGCTCTCCGCCTCTCATTCAGTGAGATCAACGCAGGGCTACTCAAAGA
AGATATCATAAGGAGGGAACATACGGGATTCAGAGTTGAGCCAGACCAAGTGAAGGTCCTTTACACCAGC
ATCAGAGGGATGGGGCTGCCTCGGAATGGAGCGTGGGGTAAGGAGAACTTTAGAAAAGCTGAGAACCATG
AACTCAAGGTTGAGGAGAATATGGACCAAGTCCAGAGGAAAGGGAAAATGCAGAACCTCCTGGGAAGGAG
AAAGGCTGTGCCTTTGTGGCATCTTGCACATCTGCAAACCCTCCCAGTGACAATTCCCATGCAGAAGACC
CAGGGGAGAGATAGCAAGCCTGAAGTCTCCTCCCAATACATGATGTCCAAGTGGATGACAGTGTTAGAGT
CTGAGAAGACCCCATTCACAGCTTCAAGAGGAGTTCCATTGACCAAAATAGCAGGACGTACAGAAACCTT
CGATAAAAAACAAGAGGCCCCCCAAAATTATAATGTCAGCAGCGATACATCAAAGCAAGCATCTGAAAGG
ACCCTGAATATGACCATCAGTGTCAAGACTGATAGATCAAAGCAAAAATCACAGACAGTAACAAAATTGA
GGATGCACTTTGCCAGCCCACCAATCCTGAAATCTGAGGAAGTCACAGTCATAAAGAAAGCTGAGGCTCA
GAGCAAAGACCTAAAACATGAAGCCCTTAAAGCGCTACCACTTCTTAAGTTCATTGCAGATATGGGTCAT
TTAAAGAACCAATCTACAAATGAGACACAGTTGGGAAGATTGCCAGAAGATGATGCAGCCAAAGTGGCGC
CAGGGAAGAAACTTAATTTCTCTGAAAGTCATGTTGTGATTATAACTAAAGAGGAAGAACTGAAGACAGA
CACCAAAGAGGTACCTAATTCTAAAACCCAAACTGTGTTTCCTAAATTACTGGGTGGAAGTCCACATAAA
CAAATCCCCAGAAATCAAAGCAAGACGTCATCCTCTCCCCCAGCTCTGAAGAAAGCAGTGTCTCAGTCCA
AGCCCACCATATCTGGGGGACTCCATACAGCAAGAAGCAACTTGACTGCCAAGGCTCCAACTGTGGGATA
CCAGCAAAGCCATGCAAATATCCCTGAAAACCCTGGAATGCACCACGTGTTCAGAATTGATGTGACCCTT
TCTCCAAGGGATCTCAATGCTCCGGGTCAGTTTGGGCGCCCTGTGGTTGTTCCCCCTGAGAAGAAGAAGG
AGGCCGAGCAGAGATGGAAAGAAGGAAACTTCAATGTCTACCTTAGTGATTTGATTCCAGTGGACAGAGC
CATTGAAGACACAAGGCCTGCTGGGTGTGCAGAGCAACTAGTTCACAATGACCTCCCAACCACCAGCATC
ATCATGTGCTTTGTAGATGAGGTGTGGTCCGCTCTACTGAGGTCTGTGCACAGCGTCCTCAACCGCTCCC
CTCCACACCTCATCAAGGAGATTCTGCTGGTGGATGACTTCAGCACCAAAGAATACCTCAAAGCTGATTT
GGATAAATACATGTCTCAATTTCCAAAAGTTCGGATTCTTCGCCTGAAGGAGAGACATGGCTTGATCAGA
GCGAGGCTGGCTGGGGCACAGAACGCAACAGGTGATGTGCTGACATTCCTAGACTCTCATGTGGAGTGTA
ATGTGGGCTGGCTGGAACCTCTACTGGAAAGAGTTTATTTAAATAGAAAGAAAGTGGCCTGTCCAGTAAT
TGAAGTCATAAATGACAAGGACATGAGTTACATGACAGTGGACAACTTCCAAAGAGGTGTCTTCACCTGG
CCCATGAACTTTGGCTGGAAAACAATCCCTCCAGATGTTGTTGCAAAAAATGGAATTAAAGAAACAGATA
TAATAAGGTGCCCAGTCATGGCAGGTGGATTATTTTCCATTGACAAAAGTTACTTTTATGAACTTGGAAC
ATATGACCCTGGTCTTGATGTTTGGGGAGGAGAAAATATGGAGCTATCATTCAAGGTCTGGATGTGTGGT
GGTGAAATTGAGATCATCCCCTGTTCCAGAGTGGGCCACATATTCAGAAACGACAATCCATATTCCTTCC
CCAAAGACCGTATGAAGACAGTGGAACGGAACCTGGTGCGGGTTGCTGAGGTTTGGCTTGATGACTACAG
GGAACTCTTCTATGGCCATGGGGATCACCTCATAGACCAAGGGCTGGATGTGGGCAACCTTACCCAGCAA
AGGGAGTTGCGGAAGAAGCTGAAATGCAAAAGTTTCAAGTGGTACTTGGACAATGTCTTTCCTGACTTGA
AGGCGCCCGTTGTGAGAGCTAGTGGTGTGCTTATTAATATGGCCTTGGGCAAGTGCGTTTCCATTGAAAA
TATCACAGTCACCCTCGAGGACTGCGATGGGAGCAGCCAGCTTCAACAATTTAATTATACCTGGGTAAGA
CTTATTAAGCACGGAGAGTGGTGTGTGGCACCCATCCCTGAAAAAGGATCCCTGACACTGTACCATTGTG
ACAACAGAAACAACAGGCTTAAATGGCTGCACAAATCAGCATCTGCCTTCCATCCAGAACTGGTGGATCA
CATTGTTTTTGAAAACTATCAGCAGTTATTATGTATGGAAGGGAATTTCTCTCAGAAGACCCTGAAACTG
GCTGCTTGTAACCCAATGGAACTGCAACAAAAGTGGAAATTTGAAAAATACTACGAAGTCTAA

Translation (930 aa):
MNKIRKFFRGSGRVLAFIFAASVIWLLFDMAALRLSFSEINAGLLKEDIIRREHTGFRVEPDQVKVLYTS
IRGMGLPRNGAWGKENFRKAENHELKVEENMDQVQRKGKMQNLLGRRKAVPLWHLAHLQTLPVTIPMQKT
QGRDSKPEVSSQYMMSKWMTVLESEKTPFTASRGVPLTKIAGRTETFDKKQEAPQNYNVSSDTSKQASER
TLNMTISVKTDRSKQKSQTVTKLRMHFASPPILKSEEVTVIKKAEAQSKDLKHEALKALPLLKFIADMGH
LKNQSTNETQLGRLPEDDAAKVAPGKKLNFSESHVVIITKEEELKTDTKEVPNSKTQTVFPKLLGGSPHK
QIPRNQSKTSSSPPALKKAVSQSKPTISGGLHTARSNLTAKAPTVGYQQSHANIPENPGMHHVFRIDVTL
SPRDLNAPGQFGRPVVVPPEKKKEAEQRWKEGNFNVYLSDLIPVDRAIEDTRPAGCAEQLVHNDLPTTSI
IMCFVDEVWSALLRSVHSVLNRSPPHLIKEILLVDDFSTKEYLKADLDKYMSQFPKVRILRLKERHGLIR
ARLAGAQNATGDVLTFLDSHVECNVGWLEPLLERVYLNRKKVACPVIEVINDKDMSYMTVDNFQRGVFTW
PMNFGWKTIPPDVVAKNGIKETDIIRCPVMAGGLFSIDKSYFYELGTYDPGLDVWGGENMELSFKVWMCG
GEIEIIPCSRVGHIFRNDNPYSFPKDRMKTVERNLVRVAEVWLDDYRELFYGHGDHLIDQGLDVGNLTQQ
RELRKKLKCKSFKWYLDNVFPDLKAPVVRASGVLINMALGKCVSIENITVTLEDCDGSSQLQQFNYTWVR
LIKHGEWCVAPIPEKGSLTLYHCDNRNNRLKWLHKSASAFHPELVDHIVFENYQQLLCMEGNFSQKTLKL
AACNPMELQQKWKFEKYYEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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