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Report for CCDS23760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23760.1 Public Mus musculus 10 Echdc1 23 108 98 CCDS HistoryNCBI Gene:52665Re-query CCDS DB by CCDS ID:23760.1Re-query CCDS DB by GeneID:52665See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020034.5 ENSMUSP00000020034.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020034.5Link to Ensembl Protein Viewer:ENSMUSP00000020034.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020034Re-query CCDS DB by Protein ID:ENSMUSP00000020034
Original member Current member NCBI NM_025855.4 NP_080131.4 Accepted alive Link to Nucleotide Sequence:NM_025855.4Link to Protein Sequence:NP_080131.4Re-query CCDS DB by Nucleotide ID:NM_025855Re-query CCDS DB by Protein ID:NP_080131Link to BLAST:NP_080131.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080131.4 322 Q9D9V3-1 322 100% 0 0

Chromosomal Locations for CCDS 23760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 29313667 29313733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29317507 29317722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29322275 29322417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29331819 29331871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29334191 29334271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29344341 29344749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGAGAAGGTGTGAGGTCAATTCTAAGCCGATTTCTGAATATTTTGGAATCCCTTGTGAGAACCGAGAAA
TGGCAAAATGTCTTTTGACTTCATCTCTGTCTGTAAGAACAAAACTCTTACAAACAGGAGTGTCGCTTTA
TAATACGAGTCATGGCTTCCACGAGGAGGAAGTGAAGAAGATACTGGAGCAGTTTCCTGGTGGATCCATT
GACCTCCTAAAGAAGCAGAACGGCATTGGCATTCTGACGCTAAACAACCCCAATAAAATGAATGCCTTCT
CAGGTGTCATGATGCTACAACTTTTGGAAAGGGTAATTGAATTAGAAAATTGGACAGAAGGGAAAGGCCT
CATTATCCATGGAGCAAAAAATACTTTCTGCTCAGGATCTGATCTGAATGCTGTGAAGGCACTCTCCACT
CCAGAAAGTGGAGTGGCCTTATCTATGTTCATGCAAAACACGTTAACAAGATTTATGAGACTACCGTTAA
TAAGTGTTGCTCTGGTTCAAGGCTGGGCAATGGGTGGAGGAGCAGAACTTACTACAGCATGTGATTTCAG
GTTGATGACTGAGGAAAGTGTGATCAGATTTGTCCACAAGGAGATGGGTATAGTTCCAAGCTGGGGTGGT
ACCAGCCGTCTGGTTGAAATCATTGGCAGCAGACAAGCTCTCAAAGTGTTAAGTGGGACTCTCAAACTGG
ATTCCAAGGAAGCTTTAAATATAGGCTTGACTGATGAGGTCTTACAGCCCTCAGATGAAACTACGGCTCT
AGAACAGGCACAAGAGTGGCTGGAGAAATTTGTCAGTGGGCCTCCACAAGTCATTAGGGGTTTAAAAAAA
TCTGTCTGCTCTGCCCGAGAACTGTATATAGAGGAGGCGTTACAGAATGAACGAGACGTTTTGGAAACAC
TGTGGGGTGGACCTGCAAATTTAGAGGCTATTGCTAAGAAAGGAAAGCATACTAAATAG

Translation (322 aa):
MRRCEVNSKPISEYFGIPCENREMAKCLLTSSLSVRTKLLQTGVSLYNTSHGFHEEEVKKILEQFPGGSI
DLLKKQNGIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIHGAKNTFCSGSDLNAVKALST
PESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEESVIRFVHKEMGIVPSWGG
TSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVLQPSDETTALEQAQEWLEKFVSGPPQVIRGLKK
SVCSARELYIEEALQNERDVLETLWGGPANLEAIAKKGKHTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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