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Report for CCDS51401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51401.1 Public Mus musculus 4 Mmel1 23 108 98 CCDS HistoryNCBI Gene:27390Re-query CCDS DB by CCDS ID:51401.1Re-query CCDS DB by GeneID:27390See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163732.7 ENSMUSP00000131753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163732.7Link to Ensembl Protein Viewer:ENSMUSP00000131753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163732Re-query CCDS DB by Protein ID:ENSMUSP00000131753
Original member Current member NCBI NM_013783.2 NP_038811.2 Accepted alive Link to Nucleotide Sequence:NM_013783.2Link to Protein Sequence:NP_038811.2Re-query CCDS DB by Nucleotide ID:NM_013783Re-query CCDS DB by Protein ID:NP_038811Link to BLAST:NP_038811.2

Chromosomal Locations for CCDS 51401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154871653 154871776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154881647 154881715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154882270 154882329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154883173 154883334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154883624 154883704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154884946 154885041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154885504 154885622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154886151 154886216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154887627 154887761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154887837 154887926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154889507 154889643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154889928 154890021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154890839 154890967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154891481 154891579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154891944 154892027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154892416 154892519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154892824 154892882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154893232 154893351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154893831 154893964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154894075 154894140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154894597 154894692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154894961 154895037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154895126 154895225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGGTGGAGAGAGCAGGCTGGTGTCGGAAGAAGTCCCCAGGCTTCGTGGAGTATGGGCTGATGGTGCTGC
TGCTGCTGCTGTTGCTGGGAGCCATAGTGACTCTGGGTGTCTTCTACAGCATAGGGAAGCAGCTGCCCCT
CTTAACTAGCCTGCTACACTTCTCCTGGGATGAGAGGACGGTTGTAAAACGAGCCCTCAGGGATTCATCA
CTGAAAAGTGACATCTGCACCACCCCAAGCTGTGTGATAGCAGCTGCCAGAATCCTCGAAAACATGGACC
AATCGAGGAACCCCTGTGAAAACTTCTACCAGTACGCTTGCGGAGGCTGGCTGAGGCACCACGTGATCCC
AGAGACCAACTCCAGATACAGCGTCTTTGACATCCTTCGGGACGAGCTGGAGGTTATCCTCAAAGGGGTG
CTGGAGGATTCCACTTCCCAGCATCGCCCGGCCGTGGAGAAGGCCAAGACACTATATCGCTCCTGCATGA
ACCAAAGTGTGATCGAGAAGAGAGACTCTGAGCCCCTGCTGAGCGTCTTAAAAATGGTAGGAGGTTGGCC
TGTGGCCATGGATAAGTGGAACGAGACCATGGGCCTCAAGTGGGAACTGGAGCGACAGTTGGCTGTGTTG
AACTCGCAGTTCAACAGGCGGGTCCTCATCGACCTCTTCATCTGGAATGACGACCAGAACTCCAGCCGGC
ATGTCATCTACATAGACCAGCCCACCTTGGGCATGCCATCCCGGGAGTACTATTTCCAGGAGGACAACAA
CCACAAGGTACGGAAAGCCTACCTGGAGTTCATGACGTCAGTGGCCACTATGCTTAGGAAAGACCAGAAC
CTGTCCAAGGAGAGCGCCATGGTGCGGGAGGAGATGGCGGAGGTGCTGGAACTGGAGACGCATCTGGCCA
ACGCCACAGTCCCCCAGGAGAAAAGGCATGATGTCACTGCCCTGTACCACCGAATGGACCTGATGGAGCT
ACAGGAAAGGTTTGGTCTGAAGGGGTTTAACTGGACTCTCTTCATACAAAACGTGTTGTCTTCTGTGGAA
GTCGAGCTGTTCCCAGATGAGGAGGTGGTGGTCTACGGCATCCCCTACCTGGAGAATCTGGAGGATATCA
TTGATAGCTACTCAGCACGGACCATGCAGAACTACCTGGTATGGCGCCTGGTGCTAGATCGAATTGGCAG
CCTGAGCCAGAGATTCAAAGAGGCGCGTGTGGACTACCGCAAGGCGCTGTACGGCACGACCGTGGAGGAG
GTACGCTGGCGAGAGTGTGTCAGCTATGTCAACAGTAACATGGAGAGCGCCGTGGGCTCCCTCTACATCA
AGCGGGCCTTCTCCAAGGACAGCAAGAGCACGGTCAGAGAGCTGATTGAGAAGATAAGGTCCGTGTTTGT
GGATAACCTGGATGAGCTGAACTGGATGGACGAGGAATCCAAGAAGAAGGCCCAGGAAAAGGCCATGAAT
ATACGGGAACAGATTGGCTACCCTGACTACATTTTGGAAGATAACAATAAACACCTGGATGAGGAATACT
CCAGTTTGACTTTCTATGAGGACCTGTATTTTGAGAACGGACTTCAGAACCTCAAGAACAATGCCCAGAG
GAGCCTCAAGAAGCTTCGGGAAAAGGTGGACCAGAATCTCTGGATCATCGGGGCTGCAGTGGTCAATGCA
TTCTACTCCCCAAACAGAAACCAGATCGTCTTTCCAGCAGGGATTCTCCAGCCGCCCTTCTTCAGCAAGG
ACCAACCACAGTCCTTGAATTTTGGGGGCATCGGGATGGTGATTGGGCACGAGATCACACACGGCTTTGA
TGATAATGGTCGTAACTTTGACAAGAACGGCAACATGCTGGACTGGTGGAGTAACTTCTCGGCCCGGCAC
TTCCAACAGCAGTCGCAATGCATGATCTATCAGTACGGCAACTTCTCTTGGGAACTAGCAGACAACCAGA
ATGTGAACGGATTCAGTACCCTCGGGGAGAACATTGCCGACAACGGAGGTGTGCGACAGGCATACAAGGC
TTACCTACGGTGGCTGGCTGATGGCGGCAAAGATCAGCGACTGCCGGGACTGAACCTGACCTATGCCCAG
CTTTTCTTCATCAACTATGCCCAGGTGTGGTGTGGGTCCTATAGGCCGGAGTTCGCCGTCCAGTCCATCA
AGACGGACGTCCACAGTCCTCTTAAGTACAGGGTGCTGGGCTCACTACAGAACCTGCCAGGCTTCTCTGA
GGCATTCCACTGCCCACGAGGCAGCCCCATGCACCCCATGAAGCGATGTCGCATCTGGTAG

Translation (766 aa):
MVERAGWCRKKSPGFVEYGLMVLLLLLLLGAIVTLGVFYSIGKQLPLLTSLLHFSWDERTVVKRALRDSS
LKSDICTTPSCVIAAARILENMDQSRNPCENFYQYACGGWLRHHVIPETNSRYSVFDILRDELEVILKGV
LEDSTSQHRPAVEKAKTLYRSCMNQSVIEKRDSEPLLSVLKMVGGWPVAMDKWNETMGLKWELERQLAVL
NSQFNRRVLIDLFIWNDDQNSSRHVIYIDQPTLGMPSREYYFQEDNNHKVRKAYLEFMTSVATMLRKDQN
LSKESAMVREEMAEVLELETHLANATVPQEKRHDVTALYHRMDLMELQERFGLKGFNWTLFIQNVLSSVE
VELFPDEEVVVYGIPYLENLEDIIDSYSARTMQNYLVWRLVLDRIGSLSQRFKEARVDYRKALYGTTVEE
VRWRECVSYVNSNMESAVGSLYIKRAFSKDSKSTVRELIEKIRSVFVDNLDELNWMDEESKKKAQEKAMN
IREQIGYPDYILEDNNKHLDEEYSSLTFYEDLYFENGLQNLKNNAQRSLKKLREKVDQNLWIIGAAVVNA
FYSPNRNQIVFPAGILQPPFFSKDQPQSLNFGGIGMVIGHEITHGFDDNGRNFDKNGNMLDWWSNFSARH
FQQQSQCMIYQYGNFSWELADNQNVNGFSTLGENIADNGGVRQAYKAYLRWLADGGKDQRLPGLNLTYAQ
LFFINYAQVWCGSYRPEFAVQSIKTDVHSPLKYRVLGSLQNLPGFSEAFHCPRGSPMHPMKRCRIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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