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Report for CCDS38856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38856.1 Public Mus musculus 4 Or10ak14 23 108 98 CCDS HistoryNCBI Gene:258259Re-query CCDS DB by CCDS ID:38856.1Re-query CCDS DB by GeneID:258259See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084315.3 ENSMUSP00000092427.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084315.3Link to Ensembl Protein Viewer:ENSMUSP00000092427.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084315Re-query CCDS DB by Protein ID:ENSMUSP00000092427
Original member Current member NCBI NM_207152.2 NP_997035.2 Accepted alive Link to Nucleotide Sequence:NM_207152.2Link to Protein Sequence:NP_997035.2Re-query CCDS DB by Nucleotide ID:NM_207152Re-query CCDS DB by Protein ID:NP_997035Link to BLAST:NP_997035.2

Chromosomal Locations for CCDS 38856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118753595 118754536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTTTCCAAGGCAGAACCAAAGTTGGGTTTCAGAGTTCATCCTGATTGGCTTCTCCAGTGATCCCACAA
CCAACAGCATCCTCTTCATTGTCTTCCTTCTCATCTACCTGAACTCAGTCCTGGGCAACGGACTCATCAT
CATGCTGGTCTGCCTGGACACACAGCTGCACACTCCTATGTACTTTTTCCTCTGTACCCTCTCCCTGTTG
GATATGAGCTATGTCACTACCACCATGCCCCAGATGTTGGTGCATCTTCTTGCTCACTCTCAGACCATCT
CCTTTGCTGGCTGCTGGCTGCAGATGTATATGTTCAGTGCCCTGGGTATAGCTGAGAGCATCCTCTTTGT
TGTGATGGCTTATGACCGGTATGTGGCAATTTGCTATCCACTGCGCTATACTGTCATCCTCAACTGGGGC
CTGTGCATACGATTGGCAGCAGGGACTTGGATCTGTGGTTCCTTTTCCTCTTTGTTGCATACTTTCTTCA
CCATGAGTCTGCCATATTGTGGGCCCAAAAGGGTTGACCACTATTTCTGTGAAGGTCCTTCAGTGCGTAG
TCTGGCTTGCATGGATACCCACCTCATTGAGATGGTGGACTTGGTGTTGAGTGTTTTTGTGGTTGTTACT
CCAATTTCCCTCATTGTGGCTTCCTACATTCACATTACCAAGGCAATTCTCAAGATCAAGTCCACCCAGG
CCCGCTGTAAAGCTTTCTCTACCTGTGCCTCCCACCTGACTGTGGTCACATTTTTCTATATTCCAGCCAT
TTACATCTACATTAGGCCAAACTCCAGCTACTCCCCTGAGAGAGACAAGCAGATCTCACTCTTTTACAAT
GTTTTCACAGCCTTGCTCAACCCTGTGGTCTATAGTCTGAGAAACAAGGACATTAAGAGGGCATTTCTCA
AGGTAATGGGACTTGGTAGGATGGACTGGTGA

Translation (313 aa):
MFPRQNQSWVSEFILIGFSSDPTTNSILFIVFLLIYLNSVLGNGLIIMLVCLDTQLHTPMYFFLCTLSLL
DMSYVTTTMPQMLVHLLAHSQTISFAGCWLQMYMFSALGIAESILFVVMAYDRYVAICYPLRYTVILNWG
LCIRLAAGTWICGSFSSLLHTFFTMSLPYCGPKRVDHYFCEGPSVRSLACMDTHLIEMVDLVLSVFVVVT
PISLIVASYIHITKAILKIKSTQARCKAFSTCASHLTVVTFFYIPAIYIYIRPNSSYSPERDKQISLFYN
VFTALLNPVVYSLRNKDIKRAFLKVMGLGRMDW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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