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Report for CCDS48978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48978.1 Public Mus musculus 11 Gprc5c 23 108 98 CCDS HistoryNCBI Gene:70355Re-query CCDS DB by CCDS ID:48978.1Re-query CCDS DB by GeneID:70355See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053361.11 ENSMUSP00000061760.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053361.11Link to Ensembl Protein Viewer:ENSMUSP00000061760.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053361Re-query CCDS DB by Protein ID:ENSMUSP00000061760
Original member Current member NCBI NM_001110337.1 NP_001103807.1 Accepted alive Link to Nucleotide Sequence:NM_001110337.1Link to Protein Sequence:NP_001103807.1Re-query CCDS DB by Nucleotide ID:NM_001110337Re-query CCDS DB by Protein ID:NP_001103807Link to BLAST:NP_001103807.1

Chromosomal Locations for CCDS 48978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 114863499 114864546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114866625 114866719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114868496 114868645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114870321 114870353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGCCACTCACAGAACCTTGCTGATGTGCCTAGGACTGCCTCTCTTCTTCCCAGGAGCCTTGGCCCAGA
ATCATGCCCCACCTGGTTGCAGCCCAGATCTGGATCCCCTCTACTACAACCTCTGTGACCGCTCGGGGGC
CTGGGGCATTGTCTTGGAGGCAGTGGCTGGAGCAGGCATCATCACGACATTTGTGTTAACCATCATCCTT
GTGGCTAGCCTTCCATTTGTGCAGGACACTAAGAAGCGGAGCCTCTTGGGGACCCAGGTGTTCTTCCTGC
TGGGCACCCTGGGTCTCTTCTGCCTCGTGTTTGCCTGTGTGGTGAAGCCGGACTTCTCTACCTGTGCCTC
TCGACGCTTCCTCTTTGGGGTCCTGTTTGCCATCTGCTTCTCCTGTCTGGTAGCTCACGTCCTTTCCCTC
AACTTCCTAACCCGGAAGAACCATGGGCCCCGAGGCTGGGTGATCTTCACCGTGGCGCTGCTGCTCACCC
TTGTGGAGGTCATCATTAACACCGAGTGGCTTATCATCACCCTGGTACGGGGAGGTGGCCAGGTTAGCCC
CCTGGGCAATGTCAGTGCCGACTCGACCATGACCTCTCCGTGTGCCATCGCCAACATGGACTTTGTCATG
GCTCTCATCTACGTAATGCTGTTGCTGCTGACGGCCTTCCTAGGAGCCTGGCCCACCTTGTGTGGCCGCT
TCAAGCGCTGGCGGAAACACGGGGTCTTTGTGTTGCTCACCACTGTCATCTCCATCGCCATCTGGGTGGT
ATGGATTGTCATGTACACCTACGGCAACGAGCAGCACCATAGCCCCACCTGGGATGACCCCACGTTGGCC
ATTGCCCTCGCTGCCAATGCCTGGACCTTTGTCCTCTTCTATGTCATCCCTGAGGTCTCACAGGTGACCA
AACCTAGCCCAGAACAGAGCTACCAGGGGGACATGTACCCGACCCGAGGGGTGGGCTATGAGACCATCCT
GAAGGAGCAGACGGGCCAGAGCATGTTTGTGGAGAACAAGGCATTTTCTATGGACGAACCAGCCTCAGCA
AAGAGACCAGTGTCACCTTACAGTGGCTACAATGGACAGCTGCTGACCAGCGTGTACCAGCCCACCGAGA
TGGCCCTGATGCACAAAGGCCCGTCTGAAGGTGCATACGACGTCATCCTCCCACGGGCCACCGCCAACAG
CCAGGTGATGGGCAGTGCCAACTCAACCCTGCGGGCCGAAGACATGTACATGGTCCAGAGCCACCAGGTG
GCCACGCCACCAAAAGACGGCAAGATCTCTCAGGATCAGTCCCCGACTAATAAAACAAGATGGTAG

Translation (441 aa):
MATHRTLLMCLGLPLFFPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTFVLTIIL
VASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVLSL
NFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVSADSTMTSPCAIANMDFVM
ALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIWVVWIVMYTYGNEQHHSPTWDDPTLA
IALAANAWTFVLFYVIPEVSQVTKPSPEQSYQGDMYPTRGVGYETILKEQTGQSMFVENKAFSMDEPASA
KRPVSPYSGYNGQLLTSVYQPTEMALMHKGPSEGAYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQV
ATPPKDGKISQDQSPTNKTRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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