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Report for CCDS19728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19728.1 Public Mus musculus 5 Cldn4 23 108 98 CCDS HistoryNCBI Gene:12740Re-query CCDS DB by CCDS ID:19728.1Re-query CCDS DB by GeneID:12740See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051401.3 ENSMUSP00000053420.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051401.3Link to Ensembl Protein Viewer:ENSMUSP00000053420.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051401Re-query CCDS DB by Protein ID:ENSMUSP00000053420
Original member Current member NCBI NM_009903.2 NP_034033.1 Accepted alive Link to Nucleotide Sequence:NM_009903.2Link to Protein Sequence:NP_034033.1Re-query CCDS DB by Nucleotide ID:NM_009903Re-query CCDS DB by Protein ID:NP_034033Link to BLAST:NP_034033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034033.1 210 O35054 210 100% 0 0

Chromosomal Locations for CCDS 19728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134946113 134946745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGCGTCTATGGGACTACAGGTCCTGGGAATCTCCTTGGCAGTCCTGGGCTGGCTGGGGATCATCCTGA
GTTGTGCGCTCCCCATGTGGCGGGTGACCGCCTTCATCGGCAGCAACATCGTCACGGCACAGACCAGCTG
GGAGGGCCTCTGGATGAACTGCGTGGTGCAGAGCACAGGTCAGATGCAGTGCAAGATGTACGACTCGATG
CTCGCCCTGCCGCAGGACCTGCAGGCCGCCCGAGCCCTTATGGTCATCAGCATCATCGTGGGTGCTCTGG
GGATGCTTCTCTCAGTGGTAGGGGGCAAGTGCACCAACTGCATGGAGGACGAGACCGTCAAGGCCAAGAT
CATGATCACCGCCGGAGCCGTGTTCATCGTGGCAAGCATGCTGATTATGGTGCCCGTGTCCTGGACCGCT
CACAACGTCATCCGCGACTTCTACAACCCTATGGTGGCTTCCGGGCAGAAGAGGGAAATGGGGGCCTCGC
TTTACGTCGGCTGGGCGGCCTCCGGGCTGCTGCTCCTGGGAGGAGGCCTCCTCTGCTGCAGTTGCCCACC
TCGTAGCAACGACAAGCCCTACTCGGCCAAGTACTCCGCCGCCCGCTCTGTCCCCGCCAGCAACTATGTG
TAA

Translation (210 aa):
MASMGLQVLGISLAVLGWLGIILSCALPMWRVTAFIGSNIVTAQTSWEGLWMNCVVQSTGQMQCKMYDSM
LALPQDLQAARALMVISIIVGALGMLLSVVGGKCTNCMEDETVKAKIMITAGAVFIVASMLIMVPVSWTA
HNVIRDFYNPMVASGQKREMGASLYVGWAASGLLLLGGGLLCCSCPPRSNDKPYSAKYSAARSVPASNYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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