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Report for CCDS22572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22572.1 Public Mus musculus 8 Cdh5 23 108 98 CCDS HistoryNCBI Gene:12562Re-query CCDS DB by CCDS ID:22572.1Re-query CCDS DB by GeneID:12562See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034339.9 ENSMUSP00000034339.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034339.9Link to Ensembl Protein Viewer:ENSMUSP00000034339.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034339Re-query CCDS DB by Protein ID:ENSMUSP00000034339
Original member Current member NCBI NM_009868.4 NP_033998.2 Accepted alive Link to Nucleotide Sequence:NM_009868.4Link to Protein Sequence:NP_033998.2Re-query CCDS DB by Nucleotide ID:NM_009868Re-query CCDS DB by Protein ID:NP_033998Link to BLAST:NP_033998.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033998.2 784 P55284 784 100% 0 0

Chromosomal Locations for CCDS 22572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104112899 104113102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104125459 104125747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104126543 104126659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104128052 104128216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104129212 104129399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104130907 104131157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104136674 104136816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104137766 104137890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104138234 104138342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104140684 104140929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104142481 104142998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGCAGAGGCTCACAGAGCTGGCCACTGCTTTGGGAGCCTTCCTGGGCCTCCTGGCAGTGGCAGCAATGG
CAGGCCCTAACTTTCCCCAGATAGACACCCCCAACATGCTACCTGCCCACCATCGCCAAAAGAGAGACTG
GATTTGGAATCAAATGCACATCGATGAAGAGAAAAATGAATCGCTGCCCCACTATGTGGGAAAGATCAAG
TCCAACGTGAACCGCCAGAATGCTAAGTATGTGCTCCAAGGAGAGTTTGCTGGCAAGATCTTCGGGGTCG
ATGCTAACACAGGGAATGTGCTTGCCTATGAGAGGCTAGACCGGGAGAAAGTCTCTGAGTACTTCCTTAC
TGCCCTCATTGTGGACAAGAACACCAACAAAAACCTGGAACAACCTTCCAGCTTCACTGTCAAGGTGCAT
GATATAAATGACAATTGGCCTGTGTTTTCGCACCAGGTATTCAACGCATCTGTGCCAGAGATGTCAGCTA
TAGGGACCTCTGTCATCCGTGTGACAGCAGTGGATGCAGATGACCCCACTGTGGCCGGCCACGCCACTGT
CTTGTACCAAATCGTGAAAGGAAATGAGTATTTCAGCATTGATAATTCTGGACTCATTTTCACAAAGATC
AAAAACTTGGACCGAGAGAAACAGGCTGAATACAAGATCGTGGTGGAAACACAAGATGCCCTGGGTCTGC
GGGGAGAGTCAGGCACAGCCACTGTGATGATCAGACTGGAGGACATCAATGACAACTTCCCCGTCTTTAC
TCAATCCACATACACATTTTCGGTGCCTGAAGACATCCGAGTGGGCAAGCCCTTGGGCTTTCTGACTGTT
GTGGACCCAGATGAGCCTCAGAACCGGATGACCAAGTACAGCATCATGCAGGGCGAGTACAGGGACACCT
TCACCATTGAGACAGACCCCAAACGTAACGAGGGTATCATCAAACCCACGAAGTCCCTGGACTATGAAGT
CATCCAGCAGTACACATTCTACATTGAGGCCACAGACCCCACTATCCGATACGAATACCTGAGCAGCACT
TCAGGCAAAAACAAAGCCATGGTCACCATCAACGTCCTAGATGTGGATGAGCCCCCTGTCTTCCAGCGAC
ACTTCTACCACTTCAAGCTGCCAGAAAACCAGAAGAAACCGCTGATCGGCACTGTGGTGGCCAAAGACCC
TGACAAGGCTCAGCGCAGCATCGGGTACTCCATCCGCAAGACCAGTGACAGAGGCCAATTCTTCCGAATA
ACCAAGCAGGGAAACATCTATAACGAGAAAGAACTGGACAGAGAAACCTACGCCTGGTATAACCTGACTG
TGGAGGCCAACGAACTGGATTCTCGGGGTAACCCTGTAGGGAAAGAGTCCATTGTGCAGGTTTACATTGA
AGTCTTGGATGAGAATGACAACCCTCCGGAATTTGCCCAGCCCTACGAACCTAAAGTGTGTGAGAATGCT
GCCCAGGGCAAGCTGGTAGTACAGATCTCTGCAACAGACAAGGATGTGGTGCCAGTAAACCCAAAGTTCA
AGTTTGCCCTGAAGAACGAGGACAGCAACTTCACCCTCATAAACAACCATGACAACACCGCCAACATCAC
GGTCAAGTATGGGCAGTTTAATCGGGAGCATGCCAAGTTCCACTACCTGCCCGTGCTCATCTCAGACAAC
GGGGTGCCCAGCCTGACTGGAACCAGCACGCTAACCGTGGGTGTGTGCAAGTGCAACGAGCAGGGCGAGT
TCACCTTCTGTGAGGAGATGGCAGCCCAGGCGGGTGTCAGCATCCAGGCGCTGGTGGCCATCTTCCTCTG
CATCCTCACCATCACAGTGATTACCTTGCTGATCATCCTGCGGAGGCGGATCCGGAAGCAGGCGCATGCT
CATAGCAAGAGTGCGCTGGAGATTCACGAGCAGTTGGTCACTTACGATGAGGAGGGCGGTGGTGAGATGG
ACACCACCAGCTATGATGTGTCAGTGCTTAATTCTGTGCGCGGTGGCTCCACTAAGCCCCTGCGCTCCAC
GATGGACGCCCGGCCGGCAGTGTACACGCAGGTGCAGAAGCCGCCGCGCCTGGCGCCTGGACTGCACGGA
GGGCCCAGGGAGATGGCCACCATGATCGACGTGAAGAAAGAAGAGGCAGACAATGACGGCGGTGGCCCCC
CATACGACACACTGCACATCTACGGCTACGAGGGCGCAGAGTCCATCGCAGAGTCCCTCAGTTCCCTGAG
CACCAATTCCTCCGACTCTGACATCGATTATGACTTCCTCAACGACTGGGGACCCAGGTTCAAGATGCTG
GCTGAGCTGTACGGCTCAGATCCCCAGGAGGAACTCATCATCTAG

Translation (784 aa):
MQRLTELATALGAFLGLLAVAAMAGPNFPQIDTPNMLPAHHRQKRDWIWNQMHIDEEKNESLPHYVGKIK
SNVNRQNAKYVLQGEFAGKIFGVDANTGNVLAYERLDREKVSEYFLTALIVDKNTNKNLEQPSSFTVKVH
DINDNWPVFSHQVFNASVPEMSAIGTSVIRVTAVDADDPTVAGHATVLYQIVKGNEYFSIDNSGLIFTKI
KNLDREKQAEYKIVVETQDALGLRGESGTATVMIRLEDINDNFPVFTQSTYTFSVPEDIRVGKPLGFLTV
VDPDEPQNRMTKYSIMQGEYRDTFTIETDPKRNEGIIKPTKSLDYEVIQQYTFYIEATDPTIRYEYLSST
SGKNKAMVTINVLDVDEPPVFQRHFYHFKLPENQKKPLIGTVVAKDPDKAQRSIGYSIRKTSDRGQFFRI
TKQGNIYNEKELDRETYAWYNLTVEANELDSRGNPVGKESIVQVYIEVLDENDNPPEFAQPYEPKVCENA
AQGKLVVQISATDKDVVPVNPKFKFALKNEDSNFTLINNHDNTANITVKYGQFNREHAKFHYLPVLISDN
GVPSLTGTSTLTVGVCKCNEQGEFTFCEEMAAQAGVSIQALVAIFLCILTITVITLLIILRRRIRKQAHA
HSKSALEIHEQLVTYDEEGGGEMDTTSYDVSVLNSVRGGSTKPLRSTMDARPAVYTQVQKPPRLAPGLHG
GPREMATMIDVKKEEADNDGGGPPYDTLHIYGYEGAESIAESLSSLSTNSSDSDIDYDFLNDWGPRFKML
AELYGSDPQEELII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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