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Report for CCDS18765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18765.1 Public Mus musculus 4 Cep85 23 108 98 CCDS HistoryNCBI Gene:70012Re-query CCDS DB by CCDS ID:18765.1Re-query CCDS DB by GeneID:70012See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18765.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040271.11 ENSMUSP00000039889.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040271.11Link to Ensembl Protein Viewer:ENSMUSP00000039889.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040271Re-query CCDS DB by Protein ID:ENSMUSP00000039889
Original member Current member NCBI NM_144527.3 NP_653110.3 Accepted alive Link to Nucleotide Sequence:NM_144527.3Link to Protein Sequence:NP_653110.3Re-query CCDS DB by Nucleotide ID:NM_144527Re-query CCDS DB by Protein ID:NP_653110Link to BLAST:NP_653110.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653110.3 761 Q8BMK0 761 100% 0 0

Chromosomal Locations for CCDS 18765.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134131279 134131439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134132232 134132457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134134069 134134176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134137571 134137621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134138835 134138928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134148010 134148164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134148609 134148761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134152104 134152289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134153809 134153926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134154263 134154396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134155677 134156371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134167289 134167441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134172813 134172864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGGCCATGCAAGAAAAATACCCAAATGACAGGTCTCATGCTACTTCACCAGGTTCCAATGTGATTCAAA
AAGGCAGTTCTCTGGGAACTGAGTGGCAGACACCAGTTATCTCAGAGACCTTTCGGAGCCGCTTCAGCCG
CTGCTCAAGCATTGCTGACAGTGGGGACACAGCCATTGGGACATCATGCTCAGACATTGCAGAGGATTTT
TGCAGCTCAAGTGGCAGCCCTTCCTTCCAGCCAATCAAAAGCCACATAACCATTCCAACAGCCCATGTGA
TGCCTTCTACTTTGGGGGCCTCTCCTGCCAAACCAAATTCTGCACCTTCCGGGCCTTCTTCCGCTAAGCT
GCCCTTGTCAGGATTGACTGAAGGCGTGGGGATGACAAGAAATGGAGACTTCGGAGCTGTGAAGCGCTCT
CCAGGCCTAGCAAGGGATTTTATGTACCTCCCTAGTGCTGCCGGGGAGAATGGGAGTCAGCAGTCCTGGT
TCCCAGCAGTGGGCCACGAGAGAGAGGGGGAGATGAGGAAGTTCGATGTTCCTAGCATGGAGTCTACCCT
TAACCAGCCAGCCATGCTAGAGACGTTATACTCAGATCCACATTACCGAGCCCATTTCCCCAACCCAAGA
CCTGATACAAATAAGGATGTATACAAAGTATTGCCAGAATCCAAGAAGGCACCGGGCAGTGGTGCAGTAT
TTGAGAGGAACGGACCACATGCTAGCAGTAGTGGGGTGCTCCCTTTGGGACTCCAGCCTGCGCCTGGACT
TTCCAAGTCACTATCCTCTCAGGTGTGGCAACCAAGTCCTGACCCTTGGCATCCTGGAGAACAATCCTGT
GAACTCAGTACTTGTCGACAGCAGTTGGAATTGATCCGTTTACAGATGGAGCAAATGCAGCTTCAGAACG
GAGCCATGTGTCACCATCCTGCTGCTTTCGCTCCATTACTGCCCACCCTAGAGCCAGCACAGTGGCTCAG
CATCCTGAACAGTAACGAGCATCTCCTGAAGGAGAAGGAGCTCCTCATTGACAAGCAAAGGAAGCATATC
TCTCAGCTGGAGCAGAAAGTGCGAGAGAGTGAACTGCAAGTCCACAGTGCCCTTTTGGGCCGCCCTGCCC
CCTTTGGGGATGTCTGCTTATTGAGGCTACAGGAGTTGCAGCGAGAGAACACTTTCTTACGGGCACAGTT
TGCACAGAAGACAGAAGCCCTGAGCAAGGAGAAGATGGAGCTTGAAAAGAAACTCTCTGCATCTGAAGTT
GAAATTCAGCTCATTAGGGAGTCTCTAAAAGTGACACTACAGAAGCATTCGGAGGAGGGGAAGAAACAGG
AGGAAAGGGTCAAAGGTCGTGATAAACATATCAATAATTTGAAAAAGAAATGTCAGAAGGAATCAGAGCA
GAACCGGGAGAAGCAGCAGCGTATTGAAACCTTGGAGCGCTATCTAGCTGACCTGCCCACCCTAGAAGAC
CATCAGAAACAGACGGAGCAGCTTAAGGACGCTGAATTAAAGAACACAGAACTGCAAGAGAGAGTGGCTG
AGCTGGAGACTTTGCTGGAGGACACCCAGGCAACCTGCAGAGAGAAGGAGGTTCAGCTGGAAAGTCTGAG
ACAAAGAGAAGCAGACCTCTCCTCTGCTAGACATAGCTTTCAAGATAAACAGTCTGTGGAGGAAGCCAAT
GGAGAAAACCTCAGAGTGGACATGGAATCCCAGCAGAAGGAATGTGACTCCCTCCGAAAGATGGTGGAGA
GGCAACAGCTGAAGATGGAACAGCTGCACTCCCAAGTCCAGAGCCAAAAGCAAGAACTGGCACAAGAAGA
GGGAATCAACCAGGCACTGAGAGAGGAGGCCCAGCGGAGGGAGACGGCCCTGCAGCAGATGCGCACAGCC
GTGAAGGAGCTTTCAGTGCAAAACCAGGACCTGATTGAGAAGAATCTGACGCTGCAAGAGCACTTGCGCC
AGGCCCAGCCAGGGTCCTCATCTTCACCAGACTCAGCCCAGCTGGCCTGTGAGCTGCACCAGGAACTGGC
CAGTTGCCTTCAAGATCTGCAAGCTGTCTGCAGCATTGTGACCCAGAGGGCCCAGGGCCACAATCCTAAC
CTCTCACTACTCCTAGGCATTCACTCCACCCAGCACCCAGGGACGCAGCTAGATCTACAAAAGCCAGATG
TGATCAGGAGGAAACTAGAAGAGGTTCAACAGCTGCGCCATGACATTGAGGACTTAAGGACCAGCCTGTC
AGACAGATATGCCCAGGACATGGGAGAAAACTGTGCCACACAGTGA

Translation (761 aa):
MAMQEKYPNDRSHATSPGSNVIQKGSSLGTEWQTPVISETFRSRFSRCSSIADSGDTAIGTSCSDIAEDF
CSSSGSPSFQPIKSHITIPTAHVMPSTLGASPAKPNSAPSGPSSAKLPLSGLTEGVGMTRNGDFGAVKRS
PGLARDFMYLPSAAGENGSQQSWFPAVGHEREGEMRKFDVPSMESTLNQPAMLETLYSDPHYRAHFPNPR
PDTNKDVYKVLPESKKAPGSGAVFERNGPHASSSGVLPLGLQPAPGLSKSLSSQVWQPSPDPWHPGEQSC
ELSTCRQQLELIRLQMEQMQLQNGAMCHHPAAFAPLLPTLEPAQWLSILNSNEHLLKEKELLIDKQRKHI
SQLEQKVRESELQVHSALLGRPAPFGDVCLLRLQELQRENTFLRAQFAQKTEALSKEKMELEKKLSASEV
EIQLIRESLKVTLQKHSEEGKKQEERVKGRDKHINNLKKKCQKESEQNREKQQRIETLERYLADLPTLED
HQKQTEQLKDAELKNTELQERVAELETLLEDTQATCREKEVQLESLRQREADLSSARHSFQDKQSVEEAN
GENLRVDMESQQKECDSLRKMVERQQLKMEQLHSQVQSQKQELAQEEGINQALREEAQRRETALQQMRTA
VKELSVQNQDLIEKNLTLQEHLRQAQPGSSSSPDSAQLACELHQELASCLQDLQAVCSIVTQRAQGHNPN
LSLLLGIHSTQHPGTQLDLQKPDVIRRKLEEVQQLRHDIEDLRTSLSDRYAQDMGENCATQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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