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Report for CCDS36766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36766.1 Public Mus musculus 13 Cdk7 23 108 98 CCDS HistoryNCBI Gene:12572Re-query CCDS DB by CCDS ID:36766.1Re-query CCDS DB by GeneID:12572See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091299.7 ENSMUSP00000088845.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091299.7Link to Ensembl Protein Viewer:ENSMUSP00000088845.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000091299Re-query CCDS DB by Protein ID:ENSMUSP00000088845
Original member NCBI NM_009874.3 NP_034004.2 Updated not alive Link to Nucleotide Sequence:NM_009874.3Link to Protein Sequence:NP_034004.2Re-query CCDS DB by Nucleotide ID:NM_009874Re-query CCDS DB by Protein ID:NP_034004
Current member NCBI NM_009874.4 NP_034004.2 Accepted alive Link to Nucleotide Sequence:NM_009874.4Link to Protein Sequence:NP_034004.2Re-query CCDS DB by Nucleotide ID:NM_009874Re-query CCDS DB by Protein ID:NP_034004Link to BLAST:NP_034004.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034004.2 346 Q03147 346 100% 0 0

Chromosomal Locations for CCDS 36766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100703478 100703506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100704391 100704538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100706367 100706516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100710074 100710160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100711497 100711596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100716501 100716619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100717572 100717682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100719302 100719370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100720586 100720653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100722680 100722713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100730458 100730517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100730774 100730839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCTGTGGACGTGAAGTCTCGAGCGAAGCGCTATGAGAAACTGGACTTCCTCGGAGAGGGACAGTTTG
CGACGGTCTATAAGGCCAGGGACAAGAACACCAACCAAATCGTCGCCATTAAGAAAATCAAACTTGGACA
CAGGTCAGAAGCTAAGGATGGAATAAATAGAACAGCCTTAAGGGAGATAAAGCTCTTACAGGAACTAAGT
CATCCAAATATAATTGGTCTCCTTGATGCATTTGGACATAAGTCTAACATTAGCCTTGTCTTTGATTTTA
TGGAAACTGACCTCGAGGTTATTATAAAGGATAACAGCCTTGTGCTGACACCATCCCACATTAAAGCCTA
CATGTTGATGACTCTTCAGGGCTTAGAATATTTACATCAGCATTGGATTCTACACAGGGATCTGAAACCA
AACAACTTGTTGTTAGATGAGAATGGAGTTCTGAAACTGGCAGATTTTGGCCTGGCCAAATCATTTGGGA
GCCCCAATAGGGCTTACACACATCAAGTTGTGACCAGATGGTACCGGGCTCCTGAGTTATTGTTTGGAGC
TAGGATGTATGGTGTGGGAGTAGACATGTGGGCTGTTGGTTGTATATTAGCAGAATTGCTTCTAAGGGTT
CCATTTTTGCCTGGAGATTCAGATCTTGATCAGCTAACAAGGATATTTGAAACTCTGGGTACACCAACTG
AAGAGCAGTGGCCTGACATGTGTAGTCTTCCCGATTATGTGACATTTAAGAGTTTCCCTGGGGTCCCACT
GCAGCACATCTTCATCGCGGCTGGGGACGACCTGCTGGAGCTCATCCAAGGCCTGTTCTTATTTAACCCG
TGTACGCGGACCACAGCCTCACAGGCATTGAAGACCAAGTACTTCAGTAACCGCCCCGGGCCAACACCTG
GATGCCAGCTCCCGCGACCAAACTGTCCGGTGGAGGCATTAAAGGAACCGGCGAATCCAACCGTGGCAAC
AAAGCGGAAAAGAGCAGAGGCCTTAGAACAAGGAATATTGCCCAAGAAGCTCATTTTTTAG

Translation (346 aa):
MAVDVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS
HPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKP
NNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV
PFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGVPLQHIFIAAGDDLLELIQGLFLFNP
CTRTTASQALKTKYFSNRPGPTPGCQLPRPNCPVEALKEPANPTVATKRKRAEALEQGILPKKLIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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