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Report for CCDS37530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37530.1 Public Mus musculus 17 Lhfpl5 23 108 98 CCDS HistoryNCBI Gene:328789Re-query CCDS DB by CCDS ID:37530.1Re-query CCDS DB by GeneID:328789See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080780.7 ENSMUSP00000079598.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080780.7Link to Ensembl Protein Viewer:ENSMUSP00000079598.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080780Re-query CCDS DB by Protein ID:ENSMUSP00000079598
Original member Current member EBI ENSMUST00000232974.1 ENSMUSP00000156557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232974.1Link to Ensembl Protein Viewer:ENSMUSP00000156557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232974Re-query CCDS DB by Protein ID:ENSMUSP00000156557
Original member Current member EBI ENSMUST00000232862.1 ENSMUSP00000156959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232862.1Link to Ensembl Protein Viewer:ENSMUSP00000156959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232862Re-query CCDS DB by Protein ID:ENSMUSP00000156959
Original member Current member NCBI NM_026571.2 NP_080847.2 Accepted alive Link to Nucleotide Sequence:NM_026571.2Link to Protein Sequence:NP_080847.2Re-query CCDS DB by Nucleotide ID:NM_026571Re-query CCDS DB by Protein ID:NP_080847Link to BLAST:NP_080847.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080847.2 219 Q4KL25 219 100% 0 0

Chromosomal Locations for CCDS 37530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28576001 28576412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28579931 28580167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28582980 28582990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGTGAAGTTGCTGCCAGCCCAGGAGGCCGCCAAGATCTACCACACCAACTATGTGCGAAACTCGCGCG
CTGTGGGAGTGATGTGGGGCACGCTCACTATCTGTTTCTCGGTGCTGGTCATGGCCCTCTTTATCCAGCC
CTACTGGATAGGCGACAGTGTTAGCACACCACAGGCTGGTTACTTTGGCTTGTTCTCCTACTGCGTGGGC
AACGTGCTGTCGTCGGAACTCATCTGCAAGGGGGGCCCTCTGGACTTCTCCTCCATCCCCTCCAGAGCCT
TCAAGACTGCCATGTTCTTTGTGGCCTTGGCCATGTTCCTTATCATCGGCTCCATCATCTGCTTCAGCCT
GTTCTTCGTCTGTAATACAGCCACGGTCTACAAGATTTGCGCCTGGATGCAGCTGGCTGCTGCCACGGGC
CTAATGATCGGATGTCTAGTCTACCCAGATGGTTGGGACTCCAGTGAGGTGCGGCGTATGTGTGGCGAGC
AGACGGGCAAGTACACACTGGGCCACTGCACCATCCGCTGGGCCTTCATGCTGGCCATCCTCAGCATTGG
AGATGCACTCATCCTCTCCTTCCTGGCTTTTGTGTTGGGCTATCGGCAGGACAAGCTCCTCCCGGATGAC
TACAAGGCAGATGGGAATGAGGAAGTCTGA

Translation (219 aa):
MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVSTPQAGYFGLFSYCVG
NVLSSELICKGGPLDFSSIPSRAFKTAMFFVALAMFLIIGSIICFSLFFVCNTATVYKICAWMQLAAATG
LMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAILSIGDALILSFLAFVLGYRQDKLLPDD
YKADGNEEV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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