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Report for CCDS49738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49738.1 Public Mus musculus 15 Spryd3 23 108 98 CCDS HistoryNCBI Gene:223918Re-query CCDS DB by CCDS ID:49738.1Re-query CCDS DB by GeneID:223918See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154032.1 ENSMUSP00000121493.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154032.1Link to Ensembl Protein Viewer:ENSMUSP00000121493.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154032Re-query CCDS DB by Protein ID:ENSMUSP00000121493
Original member Current member NCBI NM_001033277.3 NP_001028449.2 Accepted alive Link to Nucleotide Sequence:NM_001033277.3Link to Protein Sequence:NP_001028449.2Re-query CCDS DB by Nucleotide ID:NM_001033277Re-query CCDS DB by Protein ID:NP_001028449Link to BLAST:NP_001028449.2

Chromosomal Locations for CCDS 49738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102117579 102117713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102118041 102118213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102118292 102118411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102118928 102118985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102119268 102119417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102128539 102128724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102130278 102130413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102130666 102130790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102131868 102131943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102133416 102133562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102136136 102136158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGAGGAGGACGCGGCGGCCCCGGTTTGTTCTCATGAACAAGATGGATGACCTCAACTTGCACTACCGGT
TTCTGAACTGGCGAAGGAGGATTCGGGAGATCCGAGAGGTCCGGGCCTTCCGATATCAGGAGAGGTTCAA
GCATATCCTTGTAGATGGTGACACTTTGAGTTACCATGGAAATTCTGGTGAAGTTGGCTGCTACGTGGCG
TCTCGACCCCTGACCAAGGACAGCAATTATTTTGAGGTATCTATCGTGGACAGTGGCGTCCGGGGCACCA
TTGCTGTGGGGCTGGTCCCTCAGTACTACAGCTTGGATCACCAGCCTGGCTGGTTGCCTGACTCCGTAGC
CTACCATGCTGATGATGGCAAGCTGTACAACGGCCGAGCCAAGGGGCGCCAGTTCGGGTCAAAGTGCAAC
TCTGGGGACCGGATCGGCTGTGGCATTGAGCCTGTGTCCTTTGATGTGCAGACTGCCCAGATCTTCTTCA
CCAAAAATGGGAAACGGGTGGGCTCCACCATCATGCCCATGTCCCCAGATGGGCTCTTCCCAGCAGTTGG
TATGCATTCCCTGGGCGAGGAGGTAAGGCTGCACCTCAATGCCGAGCTGGGCCGTGAGGATGACAGCGTC
ATGATGGTGGACAGTTACGAGGATGAATGGGGCCGGCTGCATGACGTCAGAGTCTGTGGGACGCTGCTGG
AGTATTTGGGGAAGGGCAAGAGCATCGTGGATGTGGGGCTGGCTCAGGCTCGGCACCCACTGAGCACCCG
CAGCCATTACTTTGAGGTGGAGATTGTGGATCCTGGAGAGAAGTGCTATATCGCCTTGGGGCTGGCCCGG
AAGGATTATCCCAAGAACAGACACCCTGGCTGGAGCAGAGGGTCTGTGGCCTACCACGCAGATGACGGGA
AGATCTTCCATGGCAGTGGTGTGGGGGACCCCTTTGGGCCACGCTGCTACAAAGGAGACATTATGGGCTG
TGGAATCATGTTCCCCCGGGACTACATTCTGGACAGCGAGGGGGATAGTGATGACAGTTGTGACACAGTG
ATCTTGTCCCCGACTGCCCGGGCTGTCCGGAACGTCCGAAATGTCATGTACCTGCACCAGGAAGGGGAAG
AGGAAGAGGAGGAAGAGGAGGAAGAGGAGGATGGGGAAGAGATCGAGCAGGAGCATGAGGGCAAGAAGGT
GGTGGTCTTCTTCACTCGGAATGGCAAGATCATCGGGAAGAAGGATGCTGTTGTGCCGTCTGGAGGTTTC
TTTCCTACCATTGGCATGCTCAGTTGTGGGGAGAAAGTGAAAGTAGACCTGCACCCCTTGAGTGGCTAG

Translation (442 aa):
MRRTRRPRFVLMNKMDDLNLHYRFLNWRRRIREIREVRAFRYQERFKHILVDGDTLSYHGNSGEVGCYVA
SRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCN
SGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRLHLNAELGREDDSV
MMVDSYEDEWGRLHDVRVCGTLLEYLGKGKSIVDVGLAQARHPLSTRSHYFEVEIVDPGEKCYIALGLAR
KDYPKNRHPGWSRGSVAYHADDGKIFHGSGVGDPFGPRCYKGDIMGCGIMFPRDYILDSEGDSDDSCDTV
ILSPTARAVRNVRNVMYLHQEGEEEEEEEEEEEDGEEIEQEHEGKKVVVFFTRNGKIIGKKDAVVPSGGF
FPTIGMLSCGEKVKVDLHPLSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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