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Report for CCDS22019.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22019.2 Reviewed, update pending Mus musculus 7 Chid1 23 108 98 CCDS HistoryNCBI Gene:68038Re-query CCDS DB by CCDS ID:22019.2Re-query CCDS DB by GeneID:68038See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 22019.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118694.7 ENSMUSP00000112891.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118694.7Link to Ensembl Protein Viewer:ENSMUSP00000112891.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118694Re-query CCDS DB by Protein ID:ENSMUSP00000112891
Original member Current member NCBI NM_026522.6 NP_080798.3 Pending alive Link to Nucleotide Sequence:NM_026522.6Link to Protein Sequence:NP_080798.3Re-query CCDS DB by Nucleotide ID:NM_026522Re-query CCDS DB by Protein ID:NP_080798Link to BLAST:NP_080798.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080798.3 307 Q922Q9-2 307 100% 0 0

Chromosomal Locations for CCDS 22019.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141496048 141496146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141496371 141496413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141496601 141496681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141522609 141522701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141526432 141526493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141527599 141527705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141528463 141528507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141529569 141529701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141530150 141530299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141532819 141532929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTGGCCACTTCTTCATGTCCTCTGGCTTGCTCTGGTCTGTGGCTCTGTTCACACCACCCTGTCAAAGT
CAGATGCCAAAAAAGCTGCCTCAAAGATGCTGCTGGAAAAGACTCAGTTTTCAGATAAACCTGTCCAAGA
TCGGGGTCTGGTGGTGACGGACATCAAAGCTGAGGATGTGGTTCTTGAACATCGTAGCTACTGCTCATCA
AGGGCTCGGGAGAGAAACTTTGCTGGAGAGGTCCTAGGCTACGTCACTCCATGGAACAGCCATGGCTACG
ATGTTGCCAAGGTCTTTGGGAGCAAGTTCACACAGATCTCACCAGTCTGGTTGCAACTGAAGAGACGTGG
TCGTGAGATGTTTGAAATTACAGGCCTCCATGATGTGGACCAAGGGTGGATGCGAGCTGTCAAGAAGCAT
GCCAAAGGTGTGCGCATAGTGCCTCGACTTCTGTTTGAAGACTGGACTTATGATGATTTCCGAAACGTCT
TAGACAGTGAGGATGAGATAGAAGAGCTCAGCAAGACTGTGGCACAGGTGGCAAAGAACCAGCATTTTGA
CGGTTTTGTGGTGGAGGTCTGGAGCCAGTTGCTGAGCCAGAAACATGTAGGCCTCATTCACATGCTTACT
CACTTGGCTGAGGCGCTGCACCAGGCCAGGCTGCTGGTCATTCTGGTCATCCCACCTGCTGTCACGCCGG
GGTACGTACAGACGCTGAAGGACCACAGGCCCCGAGTGGTATGGGACAGCCAGGCTGCGGAGCACTTCTT
TGAGTACAAGAAGAATCGCGGCGGGAGGCATGTTGTCTTCTACCCAACTCTGAAGTCTCTGCAGGTGCGG
CTGGAGCTAGCCAGGGAGCTTGGCGTCGGGGTCTCCATCTGGGAGCTGGGCCAAGGCCTGGATTACTTCT
ATGACCTGCTGTAG

Translation (307 aa):
MWPLLHVLWLALVCGSVHTTLSKSDAKKAASKMLLEKTQFSDKPVQDRGLVVTDIKAEDVVLEHRSYCSS
RARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKH
AKGVRIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVAQVAKNQHFDGFVVEVWSQLLSQKHVGLIHMLT
HLAEALHQARLLVILVIPPAVTPGYVQTLKDHRPRVVWDSQAAEHFFEYKKNRGGRHVVFYPTLKSLQVR
LELARELGVGVSIWELGQGLDYFYDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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