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Report for CCDS41599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41599.1 Public Homo sapiens 11 NAP1L4 24 110 108 CCDS HistoryNCBI Gene:4676Re-query CCDS DB by CCDS ID:41599.1Re-query CCDS DB by GeneID:4676See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41599.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380542.9 ENSP00000369915.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380542.9Link to Ensembl Protein Viewer:ENSP00000369915.4Re-query CCDS DB by Nucleotide ID:ENST00000380542Re-query CCDS DB by Protein ID:ENSP00000369915
Original member Current member NCBI NM_001369375.1 NP_001356304.1 Accepted alive Link to Nucleotide Sequence:NM_001369375.1Link to Protein Sequence:NP_001356304.1Re-query CCDS DB by Nucleotide ID:NM_001369375Re-query CCDS DB by Protein ID:NP_001356304Link to BLAST:NP_001356304.1
Original member Current member NCBI NM_001369376.1 NP_001356305.1 Accepted alive Link to Nucleotide Sequence:NM_001369376.1Link to Protein Sequence:NP_001356305.1Re-query CCDS DB by Nucleotide ID:NM_001369376Re-query CCDS DB by Protein ID:NP_001356305Link to BLAST:NP_001356305.1
Original member Current member NCBI NM_001369377.1 NP_001356306.1 Accepted alive Link to Nucleotide Sequence:NM_001369377.1Link to Protein Sequence:NP_001356306.1Re-query CCDS DB by Nucleotide ID:NM_001369377Re-query CCDS DB by Protein ID:NP_001356306Link to BLAST:NP_001356306.1
Original member Current member NCBI NM_001369378.1 NP_001356307.1 Accepted alive Link to Nucleotide Sequence:NM_001369378.1Link to Protein Sequence:NP_001356307.1Re-query CCDS DB by Nucleotide ID:NM_001369378Re-query CCDS DB by Protein ID:NP_001356307Link to BLAST:NP_001356307.1
Original member Current member NCBI NM_001369379.1 NP_001356308.1 Accepted alive Link to Nucleotide Sequence:NM_001369379.1Link to Protein Sequence:NP_001356308.1Re-query CCDS DB by Nucleotide ID:NM_001369379Re-query CCDS DB by Protein ID:NP_001356308Link to BLAST:NP_001356308.1
Original member Current member NCBI NM_005969.4 NP_005960.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005969.4Link to Protein Sequence:NP_005960.1Re-query CCDS DB by Nucleotide ID:NM_005969Re-query CCDS DB by Protein ID:NP_005960Link to BLAST:NP_005960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356304.1 375 Q99733-1 375 100% 0 0
NP_001356305.1 375 Q99733-1 375 100% 0 0
NP_001356306.1 375 Q99733-1 375 100% 0 0
NP_001356307.1 375 Q99733-1 375 100% 0 0
NP_001356308.1 375 Q99733-1 375 100% 0 0
NP_005960.1 375 Q99733-1 375 100% 0 0

Chromosomal Locations for CCDS 41599.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 2949259 2949264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2951259 2951315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2951780 2951809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2954527 2954646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2955744 2955766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2958399 2958544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2959770 2959909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2964680 2964751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2969803 2969934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2971448 2971534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2972102 2972243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2976024 2976123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2978284 2978342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2979207 2979220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGCAGATCACAGTTTTTCAGATGGGGTTCCTTCAGATTCCGTGGAAGCTGCTAAAAATGCAAGTAACA
CAGAAAAGCTCACAGATCAGGTGATGCAGAATCCTCGAGTTCTGGCAGCTTTACAGGAGCGACTTGACAA
TGTCCCTCACACCCCTTCCAGCTACATCGAAACTTTACCTAAAGCAGTAAAAAGAAGAATTAATGCATTG
AAACAACTTCAGGTGAGATGTGCTCACATAGAAGCCAAGTTCTATGAAGAGGTACATGACTTGGAAAGAA
AGTATGCAGCGCTATACCAGCCTCTCTTTGACAAGAGAAGAGAATTTATCACCGGCGATGTTGAACCAAC
AGATGCGGAATCGGAATGGCACAGTGAAAATGAAGAGGAAGAGAAATTGGCTGGAGACATGAAAAGTAAA
GTAGTCGTCACAGAAAAAGCAGCGGCAACGGCTGAAGAGCCAGATCCCAAAGGAATTCCAGAGTTCTGGT
TTACCATCTTCAGAAATGTGGACATGCTGAGTGAATTAGTCCAGGAATATGATGAACCAATCTTGAAACA
CCTGCAGGATATTAAAGTGAAATTTTCTGACCCTGGACAGCCTATGTCTTTTGTGTTAGAGTTCCACTTT
GAACCCAACGACTACTTTACCAACTCAGTCCTGACAAAAACCTACAAGATGAAATCAGAACCAGATAAGG
CTGATCCCTTTTCCTTTGAAGGTCCTGAGATTGTGGACTGTGACGGGTGTACTATTGACTGGAAGAAAGG
AAAGAATGTTACTGTCAAAACCATCAAGAAAAAGCAGAAGCATAAGGGTCGAGGCACTGTTAGAACAATT
ACGAAACAAGTACCCAATGAGTCCTTTTTCAACTTCTTCAATCCATTGAAAGCATCCGGGGATGGAGAAT
CACTGGATGAAGATTCTGAATTCACATTAGCCTCTGATTTTGAAATTGGACACTTTTTCCGTGAGCGGAT
AGTCCCGCGGGCTGTGCTGTACTTCACTGGGGAGGCCATAGAAGATGATGACAATTTTGAAGAAGGTGAA
GAAGGAGAAGAGGAGGAATTAGAAGGTGACGAGGAGGGAGAAGACGAGGATGATGCGGAAATTAACCCCA
AGGTGTAA

Translation (375 aa):
MADHSFSDGVPSDSVEAAKNASNTEKLTDQVMQNPRVLAALQERLDNVPHTPSSYIETLPKAVKRRINAL
KQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEEKLAGDMKSK
VVVTEKAAATAEEPDPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHF
EPNDYFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTI
TKQVPNESFFNFFNPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGE
EGEEEELEGDEEGEDEDDAEINPKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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