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Report for CCDS29882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29882.1 Public Mus musculus 19 Cyp17a1 23 108 98 CCDS HistoryNCBI Gene:13074Re-query CCDS DB by CCDS ID:29882.1Re-query CCDS DB by GeneID:13074See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026012.7 ENSMUSP00000026012.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026012.7Link to Ensembl Protein Viewer:ENSMUSP00000026012.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026012Re-query CCDS DB by Protein ID:ENSMUSP00000026012
Original member Current member NCBI NM_007809.3 NP_031835.3 Accepted alive Link to Nucleotide Sequence:NM_007809.3Link to Protein Sequence:NP_031835.3Re-query CCDS DB by Nucleotide ID:NM_007809Re-query CCDS DB by Protein ID:NP_031835Link to BLAST:NP_031835.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031835.3 507 P27786 507 100% 0 0

Chromosomal Locations for CCDS 29882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46667325 46667608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46668014 46668117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46668672 46668841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46669146 46669361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46669722 46669808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46670538 46670767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46670957 46671092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46672547 46672843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGTGGGAACTTGTGGGTCTCTTGCTGCTCATCCTGGCCTATTTCTTTTGGCCCAAGTCAAAGACACCTA
ATGCCAAGTTCCCCAGGAGCCTTCCATTCCTGCCCCTGGTGGGTAGTCTACCGTTTCTCCCCAGACGTGG
TCATATGCATGCCAACTTCTTCAAGCTGCAGGAAAAGTATGGTCCCATCTATTCTCTTCGCCTGGGTACC
ACAACTGCAGTGATTGTCGGTCACTATCAGCTGGCCAGAGAAGTGCTCGTGAAGAAGGGGAAAGAATTCT
CTGGTCGGCCCCAGATGGTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGATAG
TAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAA
CTGGAGAAGATGATATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCC
GAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTT
TGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCAC
AGCGATCTGGTGGACATATTCCCGTGGTTGAAGATTTTTCCCAATAAAAACTTGGAAATGATAAAGGAAC
ACACTAAAATTCGAGAAAAAACACTGGTTGAAATGTTTGAAAAATGCAAGGAGAAATTCAATAGTGAATC
TCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGC
CAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAG
AGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAGGTGAAGAGGAAGAT
CCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTC
ATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGG
CTAACATTGACTCCAGCATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGC
ACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTGAGCGCTTCTTAGATCCAACA
GGAAGCCATCTCATTACACCCACACCCAGTTATTTGCCCTTCGGAGCTGGTCCCCGATCGTGCATTGGAG
AGGCTCTGGCCCGGCAGGAGCTCTTTATCTTCATGGCCTTGCTGCTGCAGAGGTTTGACTTTGATGTGTC
AGATGACAAACAGCTGCCCTGTCTGGTGGGTGACCCCAAGGTGGTCTTTCTGATCGACCCTTTCAAAGTG
AAAATCACAGTGCGACAAGCATGGAAGGATGCACAGGTTGAGGTTAGCACCTAG

Translation (507 aa):
MWELVGLLLLILAYFFWPKSKTPNAKFPRSLPFLPLVGSLPFLPRRGHMHANFFKLQEKYGPIYSLRLGT
TTAVIVGHYQLAREVLVKKGKEFSGRPQMVTLGLLSDQGKGVAFADSSSSWQLHRKLVFSTFSLFRDDQK
LEKMICQEANSLCDLILTYDGESRDLSTLIFKSVINIICTICFNISFENKDPILTTIQTFTEGIVDVLGH
SDLVDIFPWLKIFPNKNLEMIKEHTKIREKTLVEMFEKCKEKFNSESLSSLTDILIQAKMNAENNNTGEG
QDPSVFSDKHILVTVGDIFGAGIETTSSVLNWILAFLVHNPEVKRKIQKEIDQYVGFSRTPSFNDRTHLL
MLEATIREVLRIRPVAPLLIPHKANIDSSIGEFAIPKDTHVIINLWALHHDKNEWDQPDRFMPERFLDPT
GSHLITPTPSYLPFGAGPRSCIGEALARQELFIFMALLLQRFDFDVSDDKQLPCLVGDPKVVFLIDPFKV
KITVRQAWKDAQVEVST


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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