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Report for CCDS51459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51459.1 Public Mus musculus 5 Krtcap3 23 108 98 CCDS HistoryNCBI Gene:69815Re-query CCDS DB by CCDS ID:51459.1Re-query CCDS DB by GeneID:69815See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054829.12 ENSMUSP00000060414.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054829.12Link to Ensembl Protein Viewer:ENSMUSP00000060414.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054829Re-query CCDS DB by Protein ID:ENSMUSP00000060414
Original member Current member EBI ENSMUST00000201625.3 ENSMUSP00000144052.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201625.3Link to Ensembl Protein Viewer:ENSMUSP00000144052.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201625Re-query CCDS DB by Protein ID:ENSMUSP00000144052
Original member Current member EBI ENSMUST00000201937.3 ENSMUSP00000144464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201937.3Link to Ensembl Protein Viewer:ENSMUSP00000144464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201937Re-query CCDS DB by Protein ID:ENSMUSP00000144464
Original member Current member NCBI NM_001363337.1 NP_001350266.1 Accepted alive Link to Nucleotide Sequence:NM_001363337.1Link to Protein Sequence:NP_001350266.1Re-query CCDS DB by Nucleotide ID:NM_001363337Re-query CCDS DB by Protein ID:NP_001350266Link to BLAST:NP_001350266.1
Original member Current member NCBI NM_027221.3 NP_081497.2 Accepted alive Link to Nucleotide Sequence:NM_027221.3Link to Protein Sequence:NP_081497.2Re-query CCDS DB by Nucleotide ID:NM_027221Re-query CCDS DB by Protein ID:NP_081497Link to BLAST:NP_081497.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350266.1 240 Q8K177-1 240 100% 0 0
NP_081497.2 240 Q8K177-1 240 100% 0 0

Chromosomal Locations for CCDS 51459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31251787 31251814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31251919 31252103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31252192 31252251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31252365 31252571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31252655 31252789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31252895 31253002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGAGGTGCTGCGGCGTCTGCGCCTTCGATGCCGCCCGAGGGCCCAGGCGGCTGATGCGCGTGGGACTCG
CGCTGATCCTGGTGGGCCACGTGAACCTCCTGGTGGGAGCTGTGTTGCATGGTACTGTTCTGCGGCACGT
GGCCAACCCCCGAGGCGCGGTCACTCCTGAGTACACCACAGCCAATGTCATTTCTGTGGGTTCGGGACTA
CTGAGCGTTTCAGTGGGACTTGTGGCCCTCTTGGCATCCAGGAACCTTCTTCGCCCACGACTGCACTGGG
CCCTGCTGACGCTGGCCTTGGTGAACCTGCTCTTGTCTGCTGCCTGCTCCATGGGCCTCCTCCTGGCTGT
ATCGCTCACTGTTGCCAATGGTGGCCGCCGTCTTATTGCTGATTGCCACCCAGGACTGATGGATCCTTCC
ATACCGCTGGACCAGGGGCCTGGACACACTGACTGCTCCTTTGATCCCACAAGAATTTATGATACAGCTT
TGGCTCTCTGGATCCCTTCTCTGTTCATGTCTGCAGCTGAGGCTGCTCTTTCTGGTTACTGTTGTGTGGC
TGCACTCACGCTACGGGGAATTGGGCCCTGCAGGAAGGAAGGGTTGCAGGAACAGCTGCAGGAACTGACA
GAGCTTGAACTTCCCGAGTGTAAAAGGCAGGAGAACGTGCAGCTGCTCCATGGCCGTCAGGACTTCCAGG
CCTTACAGAAGACCTGGGTTTAG

Translation (240 aa):
MRCCGVCAFDAARGPRRLMRVGLALILVGHVNLLVGAVLHGTVLRHVANPRGAVTPEYTTANVISVGSGL
LSVSVGLVALLASRNLLRPRLHWALLTLALVNLLLSAACSMGLLLAVSLTVANGGRRLIADCHPGLMDPS
IPLDQGPGHTDCSFDPTRIYDTALALWIPSLFMSAAEAALSGYCCVAALTLRGIGPCRKEGLQEQLQELT
ELELPECKRQENVQLLHGRQDFQALQKTWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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