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Report for CCDS19068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19068.1 Public Mus musculus 5 Lrrd1 23 108 98 CCDS HistoryNCBI Gene:242838Re-query CCDS DB by CCDS ID:19068.1Re-query CCDS DB by GeneID:242838See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044039.1 ENSMUSP00000038675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044039.1Link to Ensembl Protein Viewer:ENSMUSP00000038675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000044039Re-query CCDS DB by Protein ID:ENSMUSP00000038675
Original member Current member NCBI NM_172879.3 NP_766467.2 Accepted alive Link to Nucleotide Sequence:NM_172879.3Link to Protein Sequence:NP_766467.2Re-query CCDS DB by Nucleotide ID:NM_172879Re-query CCDS DB by Protein ID:NP_766467Link to BLAST:NP_766467.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766467.2 853 Q8C0R9 853 100% 0 0

Chromosomal Locations for CCDS 19068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3849697 3851595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3858629 3858827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3863830 3863991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3865665 3865782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3866363 3866546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTCTGAAGATGGGAGTAATGTGGAGCCTGGAGGATTTCCTAGATTTGAGTCACTGGAGGAGCCTGGAT
CTGAAATATCAGATCTCTTGGATGAAGCTTCTCCTTACTCAAAAAGTAAAGATTCCAACCAGATTTATGA
AGCAAATCCTTCAAAGGACACAGAACAGTCAGCAGCTTCCTTCACAAGCCAGCTTGATAGAAACGAAGAG
AAAAATACAGGAATTCCATTTTCAGAAACTAACATAGCAGATATCATCCCACTGTCAATAGAAGAAAGTC
TGCAGAGCTCTGGGTCATCAGAGACTAAGATGGCTGAAGATTATTACCCAGTCAAATTTCCAACTGGGAG
GAAATTTAGAGGACGAATCTTTAATGGAAATCAGAAAGGATTGGACATGAAGTCTGATAACTTTACAGTT
AATCTTGATGCCAAGGGTTTACAAGAATTCCCTGTAGACATTGTCAAAGTCAAATATGTAAAATATCTAT
ATTTAGATAAGAATCAAATAAAAAATTTCCAAGGGATAGACCCAGGGGATTTGCTAGGACTTGAAATTCT
GTCCTTGCAAGAAAATGGATTGTCATCAATTCCCTTGGAAATTCAGTTGTTTCACAACTTAAAGATACTA
AATGCCAGTTACAATGAGATATCACAGATACCCAAAGAACTACTACAACTTGAGAATATGAGACAACTCC
TCTTAAATAGTAATCATATTGACACTTTACCTTCTGGCTTAGAACATCTTAGATATTTGGAAACTTTAAG
TTTGGGTAAAAATATGTTAACATATATACCAGATTCTTTGTCTAGTTTGAAAAATTTGAGAATTCTCAAT
CTGGAATATAACCAATTAACAATATTTTCAAAATCATTATGCTTCCTTCCAAAATTAAATTCCCTAAACC
TTACTGGAAACATGATAGGCAGTTTGCCAAAAGAAGTGAGGGAACTGAAAAATTTAGAAAGCCTTCTAAT
GGATCACAATAAACTTACTTTTTTGGCAGTAGAAATATTTCAATTGCCCAAAATAAAAGAACTTCATCTA
GCTGACAATAAACTGGAAGCCATTTCACCCAAAATTGAGAATTTCAAAGAACTCAGGCTGCTTAACCTTG
ATAAAAATTTATTGCAAAGCATACCAAAAAAAATTTCCCACTGCGTAAATTTGGAATCTCTTAGTCTTAG
TGATAATAATATAGAAGAACTTCCTAAGAAAATCCGTAAGCTTAAAAATTTGAGACAACTCCATGTAAAC
AGAAATAAAATGATAACAATGACTGAAGAAATCTCACATCTTAGTAATATACACATCCTGGAGTTTTCAG
GCAATCAAATCACACATGTTCCTATTGAAATAAAAAACTGCAGAAAAATAACAAGAGTTGAACTGAATTA
TAACAATATAATGTATTTCCCAGTGGGGTTGTGTGCTTTGCAATCACTTGACTACTTGAGTTTTAATGGA
AATTATATTTCAGAAATCCCTGTGGACATGTCGTTCAGTAAGCAGCTGCTTCATTTAGAGTTGAATAGAA
ACAAACTCACCGTATTTTCAAAACATTTATGTTCTCTCACTAATCTTGAATACCTGGATCTTGCTAAAAA
CCAAATAATGACAATTCCATCCTGTATCTCTGCTATGGTATCACTCCATGTTCTCATTCTATCTGATAAT
AAGTTCGAGAGTTTCCCGAAGGAACTGTGTTCTTTAAAAAACTTGCGAGTGCTTGATATTTCAGAAAATA
AATTACAGAAAATACCTTTAGAAATATCCAAACTGAAAAGGATCCAGAAGTTAAACTTGTCAAACAATAT
TTTCACAAATTTTCCTGTTGAACTGTGCCAACTTCAAACTCTTGAGGAGCTGAATATAAGTCAGACAAGT
GGGAAAAAGTTAACAAGACTTCCAGAAGAGGTGTCTCATATGACTCAACTCAAAATACTCAACATCTCAA
ACAATGCCATCAAAGATATTCCAAAAAATATAGGGGAGCTGAGAAGTCTGGTTAGTTTTTATGCGAGCAA
CAATCAAATAAGTTCTCTTCCATCATCCTTTCTGTCTTTAGAAGTTCTACAGAGCCTAGATCTCAGAGGA
AACAATATGACAGCTTTGCCCAGTGGTATCTACAAACTTTCATCTCTGAAAGAGATAAATTTTGATGACA
ATCCTTTGATGAGACCGCCAATGGAAATCTGTAAAGGAAAAGAGATGCATATGATCACATGCTATCTCCA
AAGAGCGGATGAAAGAGATGAGAAAATCTTAGAGAAGATATTCAACATAGTTGCCAACAGTATCACTGAA
ACAAATTTTGAATTTTTGCAACAAAAACTAAACATGGCAAGCTCAGCAAACAACATGCCTGTAAGGCCCA
CTACTCCATTAAATGAAAGAATCTACCAGGCACTCATTAAGTGGAAAGCAGAGAAGGATGTACAATTCAC
AGCTACTGCCCTAAGAGACAAACTTTTTCGGGCACTAAATATGATAGGTGCCTATGATATAATGGACAAG
ATCACAGCGCTGAACCTTTATACAAGTGCCATCAAACTCTAG

Translation (853 aa):
MSEDGSNVEPGGFPRFESLEEPGSEISDLLDEASPYSKSKDSNQIYEANPSKDTEQSAASFTSQLDRNEE
KNTGIPFSETNIADIIPLSIEESLQSSGSSETKMAEDYYPVKFPTGRKFRGRIFNGNQKGLDMKSDNFTV
NLDAKGLQEFPVDIVKVKYVKYLYLDKNQIKNFQGIDPGDLLGLEILSLQENGLSSIPLEIQLFHNLKIL
NASYNEISQIPKELLQLENMRQLLLNSNHIDTLPSGLEHLRYLETLSLGKNMLTYIPDSLSSLKNLRILN
LEYNQLTIFSKSLCFLPKLNSLNLTGNMIGSLPKEVRELKNLESLLMDHNKLTFLAVEIFQLPKIKELHL
ADNKLEAISPKIENFKELRLLNLDKNLLQSIPKKISHCVNLESLSLSDNNIEELPKKIRKLKNLRQLHVN
RNKMITMTEEISHLSNIHILEFSGNQITHVPIEIKNCRKITRVELNYNNIMYFPVGLCALQSLDYLSFNG
NYISEIPVDMSFSKQLLHLELNRNKLTVFSKHLCSLTNLEYLDLAKNQIMTIPSCISAMVSLHVLILSDN
KFESFPKELCSLKNLRVLDISENKLQKIPLEISKLKRIQKLNLSNNIFTNFPVELCQLQTLEELNISQTS
GKKLTRLPEEVSHMTQLKILNISNNAIKDIPKNIGELRSLVSFYASNNQISSLPSSFLSLEVLQSLDLRG
NNMTALPSGIYKLSSLKEINFDDNPLMRPPMEICKGKEMHMITCYLQRADERDEKILEKIFNIVANSITE
TNFEFLQQKLNMASSANNMPVRPTTPLNERIYQALIKWKAEKDVQFTATALRDKLFRALNMIGAYDIMDK
ITALNLYTSAIKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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