NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44552.1 Public Homo sapiens 11 NAV2 24 110 108 CCDS HistoryNCBI Gene:89797Re-query CCDS DB by CCDS ID:44552.1Re-query CCDS DB by GeneID:89797See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533917.5 ENSP00000437316.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533917.5Link to Ensembl Protein Viewer:ENSP00000437316.1Re-query CCDS DB by Nucleotide ID:ENST00000533917Re-query CCDS DB by Protein ID:ENSP00000437316
Original member Current member NCBI NM_001111019.3 NP_001104489.1 Accepted alive Link to Nucleotide Sequence:NM_001111019.3Link to Protein Sequence:NP_001104489.1Re-query CCDS DB by Nucleotide ID:NM_001111019Re-query CCDS DB by Protein ID:NP_001104489Link to BLAST:NP_001104489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104489.1 1493 Q8IVL1-5 1493 100% 0 0

Chromosomal Locations for CCDS 44552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20023107 20023132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20035959 20036097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20043981 20044272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20044968 20045670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20048728 20049195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20051289 20051333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20054080 20054240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20055769 20055957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20062307 20062359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20068186 20068209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20068324 20068398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20077552 20077635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20077993 20078104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20080064 20080209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20083007 20083179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20090865 20091018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20092206 20092368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20093099 20093199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20095672 20095767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20097577 20097745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20100937 20101172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20103255 20103409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20103653 20103724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20105531 20105727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20107664 20107782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20114592 20114795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20118133 20118258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4482 nt):
ATGCTCTGGCCTAGGAACCTTACAAGCTGGGACGACAGCAGCTCCGTCAGCAGCGGCATCAGCGACACCA
TAGACAACCTCAGCACTGATGACATCAACACCAGCTCCTCCATCAGCTCTTATGCCAACACACCTGCCTC
CTCTCGAAAAAACCTGGATGTGCAGACTGATGCTGAGAAGCACTCACAGGTGGAGAGGAATTCCCTGTGG
TCTGGTGATGATGTCAAGAAATCAGACGGAGGCTCAGACAGCGGCATAAAAATGGAGCCAGGTTCCAAGT
GGAGGCGGAATCCTTCTGATGTGTCTGACGAGTCCGACAAAAGCACGTCGGGCAAGAAGAATCCTGTCAT
CTCCCAGACAGGCTCATGGCGGCGAGGCATGACAGCTCAGGTGGGCATCACCATGCCAAGGACGAAGCCT
TCAGCCCCGGCAGGCGCACTGAAGACCCCAGGAACTGGAAAAACAGACGACGCAAAGGTGTCTGAGAAAG
GAAGGCTTTCTCCTAAAGCCTCCCAGGTGAAGCGCTCCCCATCAGATGCAGGCCGGAGCAGTGGTGACGA
ATCCAAAAAGCCCCTCCCCAGCAGCTCTAGGACACCTACTGCCAATGCCAACAGCTTTGGGTTCAAGAAG
CAGAGTGGTTCCGCCGCCGGCCTGGCCATGATCACAGCCAGCGGGGTGACTGTCACCAGCAGGTCAGCCA
CACTGGGCAAAATCCCAAAGTCATCTGCACTCGTCAGTCGGTCTGCTGGTCGGAAGTCAAGTATGGATGG
GGCTCAGAATCAGGATGACGGGTATCTAGCCCTAAGCTCCCGGACAAACCTTCAGTACCGGAGTTTGCCG
AGGCCCAGTAAGTCCAACAGCCGGAACGGGGCTGGGAACAGGTCTAGCACCAGCAGCATAGATTCCAACA
TTAGCAGCAAGTCCGCAGGCCTGCCAGTGCCCAAACTGAGGGAGCCTTCCAAAACAGCCCTAGGCAGCTC
TCTACCAGGTCTGGTCAACCAAACAGACAAGGAGAAAGGCATCTCATCAGACAACGAGAGTGTGGCTTCC
TGTAACTCGGTGAAAGTGAATCCGGCAGCCCAGCCTGTGTCCAGTCCGGCTCAGACCAGTCTCCAGCCTG
GAGCCAAGTACCCAGATGTGGCCTCTCCCACACTCCGCAGACTCTTTGGTGGGAAGCCTACCAAGCAAGT
GCCCATCGCCACAGCTGAAAACATGAAAAATTCGGTGGTCATCTCCAATCCTCATGCCACCATGACTCAG
CAAGGTAACCTAGACTCCCCGTCAGGCAGTGGCGTCCTGAGCAGTGGGAGCAGCAGTCCTCTCTACAGCA
AGAATGTGGACCTCAACCAGTCTCCGCTAGCCTCCAGCCCCAGCTCAGCCCACTCGGCCCCTTCCAACAG
CCTCACCTGGGGCACCAACGCCAGCAGCTCCTCCGCAGTTAGCAAGGATGGCCTGGGCTTTCAGTCTGTC
AGCAGCCTCCACACCAGCTGTGAGTCCATCGACATCTCCCTCAGCAGTGGAGGGGTCCCCAGCCACAATT
CTTCCACTGGCCTCATCGCCTCCTCCAAGGACGACTCCTTGACTCCCTTTGTCAGAACTAACAGTGTGAA
GACCACACTGTCAGAAAGTGACCCGCACCTTGATAGGAACACTTTGCCTAAGAAAGGACTCAGGTATACT
CCCACCTCCCAGCTTCGCACGCAAGAAGATGCAAAAGAATGGTTACGGTCCCATTCTGCAGGAGGCCTTC
AGGACACCGCTGCCAATTCCCCCTTTTCCTCTGGCTCCAGCGTGACTTCTCCCTCCGGAACAAGATTCAA
CTTTTCCCAGCTTGCGAGTCCCACCACTGTCACCCAGATGAGCTTGTCCAACCCGACCATGCTGAGGACT
CACAGCCTCTCCAATGCTGATGGGCAGTATGATCCATACACTGACAGCCGCTTCCGGAATAGCTCCATGT
CCCTGGATGAGAAGAGCAGAACCATGAGCCGTTCAGGCTCATTCCGGGATGGGTTTGAAGAAGTTCATGG
ATCCTCACTCTCCTTGGTTTCCAGCACATCGTCAGTTTATTCTACACCAGAAGAAAAATGCCAGTCAGAG
ATTCGCAAGCTGCGGCGGGAACTGGATGCCTCCCAGGAGAAAGTTTCAGCTTTGACCACCCAGCTGACAG
CAAATGCTCACCTTGTGGCAGCCTTTGAACAGAGTCTTGGTAACATGACAATCAGGCTCCAGAGTCTGAC
CATGACAGCTGAGCAGAAGGACTCAGAACTGAATGAGTTAAGAAAAACCATTGAGCTGCTAAAGAAACAG
AACGCAGCTGCCCAGGCTGCCATTAATGGAGTAATTAACACACCTGAGCTCAACTGCAAAGGAAACGGCA
CTGCCCAGTCTGCAGACCTCCGCATCCGCAGGCAGCACTCCTCAGACAGCGTCTCCAGCATCAACAGTGC
CACCAGCCACTCCAGCGTGGGCAGCAACATAGAGAGTGACTCAAAGAAGAAGAAGCGGAAGAACTGGTTA
CGCAGCTCCTTCAAGCAAGCTTTCGGGAAGAAGAAGTCCCCAAAATCTGCGTCCTCTCATTCAGATATTG
AGGAGATGACGGATTCTTCTTTGCCTTCCTCACCAAAGTTACCGCACAATGGGTCCACAGGTTCCACCCC
ACTGCTGAGGAATTCTCACTCCAACTCTCTAATTTCAGAATGCATGGATAGTGAAGCTGAGACCGTCATG
CAGCTCCGAAATGAGTTAAGAGACAAGGAGATGAAGCTGACGGATATCCGCTTAGAAGCTCTCAGTTCTG
CCCACCAGCTGGACCAGCTCCGGGAGGCCATGAACAGGATGCAGAGTGAAATAGAGAAGCTGAAAGCTGA
GAATGATCGGCTGAAGTCAGAGTCTCAAGGCAGTGGCTGCAGCCGGGCTCCTTCCCAAGTGTCCATCTCT
GCCTCCCCGAGGCAGTCCATGGGCCTCTCCCAGCACAGCTTGAACCTCACTGAGTCAACCAGCCTGGACA
TGTTGCTGGATGACACTGGTGAATGCTCGGCTCGGAAGGAAGGAGGCAGGCATGTTAAGATAGTTGTCAG
CTTTCAGGAGGAAATGAAGTGGAAGGAGGATTCCAGACCACATCTCTTTCTTATTGGCTGCATTGGAGTT
AGTGGCAAGACGAAGTGGGATGTGCTCGATGGGGTGGTTAGACGGCTGTTCAAAGAATACATCATTCATG
TCGACCCAGTGAGTCAGCTAGGGCTGAATTCAGACAGCGTTCTTGGCTACAGCATTGGAGAAATCAAGCG
CAGCAACACTTCCGAAACACCGGAGCTGCTTCCTTGTGGCTATCTGGTTGGAGAGAACACGACCATCTCA
GTGACTGTGAAAGGGCTCGCAGAAAACAGCCTGGACTCACTGGTGTTTGAGTCCTTGATTCCCAAGCCCA
TCCTGCAGCGCTACGTCTCCCTCCTGATAGAGCACCGTCGGATCATTCTCTCTGGCCCCAGCGGCACTGG
GAAAACCTACCTGGCCAACCGGCTGTCTGAGTATATAGTGCTTCGAGAGGGACGGGAGTTGACAGACGGG
GTTATCGCCACCTTTAACGTGGACCATAAGTCCAGCAAGGAATTGCGCCAGTACCTGTCCAACCTTGCTG
ACCAGTGCAACAGTGAGAACAATGCTGTGGACATGCCCCTCGTCATCATCCTGGACAACCTACACCACGT
GAGCTCTCTGGGAGAGATCTTCAATGGGCTGCTCAACTGCAAGTACCACAAATGCCCTTACATAATTGGC
ACAATGAACCAGGCTACCTCTTCGACTCCCAACCTGCAGCTTCACCATAACTTCAGATGGGTGCTTTGTG
CCAACCACACGGAGCCTGTGAAGGGTTTCCTTGGCCGATTCCTGAGGAGGAAGCTCATGGAAACAGAGAT
CAGTGGGCGGGTGCGCAATATGGAGCTGGTAAAAATCATTGACTGGATTCCCAAGGTCTGGCATCACCTC
AACCGCTTCCTGGAGGCTCACAGTTCCTCGGACGTCACCATCGGCCCCCGGCTCTTCCTGTCATGCCCCA
TCGATGTGGACGGCTCGAGAGTGTGGTTCACCGACTTGTGGAACTATTCCATTATCCCCTATCTCCTGGA
AGCCGTCAGAGAAGGACTCCAGCTCTATGGAAGGCGCGCCCCCTGGGAGGATCCTGCCAAGTGGGTGATG
GACACATATCCATGGGCAGCCAGCCCACAACAGCACGAGTGGCCTCCCCTGCTGCAGTTACGGCCTGAGG
ATGTCGGCTTCGACGGCTACTCCATGCCTCGGGAGGGATCGACAAGCAAGCAGATGCCCCCCAGTGATGC
TGAAGGTGACCCGCTGATGAACATGCTGATGAGGCTGCAGGAGGCAGCCAACTACTCCAGCCCCCAGAGC
TATGACAGCGACTCCAACAGCAACAGCCATCACGATGACATCTTGGACTCCTCTTTGGAGTCCACTCTGT
GA

Translation (1493 aa):
MLWPRNLTSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRKNLDVQTDAEKHSQVERNSLW
SGDDVKKSDGGSDSGIKMEPGSKWRRNPSDVSDESDKSTSGKKNPVISQTGSWRRGMTAQVGITMPRTKP
SAPAGALKTPGTGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDESKKPLPSSSRTPTANANSFGFKK
QSGSAAGLAMITASGVTVTSRSATLGKIPKSSALVSRSAGRKSSMDGAQNQDDGYLALSSRTNLQYRSLP
RPSKSNSRNGAGNRSSTSSIDSNISSKSAGLPVPKLREPSKTALGSSLPGLVNQTDKEKGISSDNESVAS
CNSVKVNPAAQPVSSPAQTSLQPGAKYPDVASPTLRRLFGGKPTKQVPIATAENMKNSVVISNPHATMTQ
QGNLDSPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSAPSNSLTWGTNASSSSAVSKDGLGFQSV
SSLHTSCESIDISLSSGGVPSHNSSTGLIASSKDDSLTPFVRTNSVKTTLSESDPHLDRNTLPKKGLRYT
PTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRT
HSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSVYSTPEEKCQSE
IRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQ
NAAAQAAINGVINTPELNCKGNGTAQSADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWL
RSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNSHSNSLISECMDSEAETVM
QLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSIS
ASPRQSMGLSQHSLNLTESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEEMKWKEDSRPHLFLIGCIGV
SGKTKWDVLDGVVRRLFKEYIIHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTIS
VTVKGLAENSLDSLVFESLIPKPILQRYVSLLIEHRRIILSGPSGTGKTYLANRLSEYIVLREGRELTDG
VIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIG
TMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIIDWIPKVWHHL
NRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVM
DTYPWAASPQQHEWPPLLQLRPEDVGFDGYSMPREGSTSKQMPPSDAEGDPLMNMLMRLQEAANYSSPQS
YDSDSNSNSHHDDILDSSLESTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH