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Report for CCDS25710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25710.1 Public Mus musculus 11 Cbx4 23 108 98 CCDS HistoryNCBI Gene:12418Re-query CCDS DB by CCDS ID:25710.1Re-query CCDS DB by GeneID:12418See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25710.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026665.7 ENSMUSP00000026665.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026665.7Link to Ensembl Protein Viewer:ENSMUSP00000026665.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026665Re-query CCDS DB by Protein ID:ENSMUSP00000026665
Original member NCBI NM_007625.2 NP_031651.2 Updated not alive Link to Nucleotide Sequence:NM_007625.2Link to Protein Sequence:NP_031651.2Re-query CCDS DB by Nucleotide ID:NM_007625Re-query CCDS DB by Protein ID:NP_031651
Current member NCBI NM_007625.3 NP_031651.2 Accepted alive Link to Nucleotide Sequence:NM_007625.3Link to Protein Sequence:NP_031651.2Re-query CCDS DB by Nucleotide ID:NM_007625Re-query CCDS DB by Protein ID:NP_031651Link to BLAST:NP_031651.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031651.2 551 O55187-1 551 100% 0 0

Chromosomal Locations for CCDS 25710.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119080892 119082301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119082517 119082583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119084563 119084628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119085757 119085800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119085949 119086017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGAGCTGCCAGCTGTTGGCGAGCACGTCTTCGCGGTGGAGAGCATCGAAAAGAAGCGGATACGCAAGG
GCAGAGTGGAGTATCTGGTGAAATGGAGAGGCTGGTCCCCCAAATATAACACGTGGGAACCAGAGGAGAA
CATCTTGGATCCCCGGCTGCTGATCGCCTTCCAGAACAGGGAAAGGCAGGAGCAGCTGATGGGATATCGC
AAGAGAGGGCCCAAGCCCAAACCGCTGGTGGTGCAGGTGCCCACCTTTGCCCGACGCTCCAATGTTCTGA
CTGGGCTTCAAGACTCCTCCGCTGACAACCGTGCCAAGCTGGAGTTGGGCACACAGGGCAAGGGCCAGGG
GCACCAGTATGAGCTCAACAGCAAGAAGCACCATCAGTACCAGCCACATAGCAAGGAGAGGTCCGGTAAG
CCGCCCCCGCCAGGGAAGAGCGGCAAGTATTATTATCAGCTAAATAGCAAAAAGCACCACCCCTACCAGC
CAGACCCCAAAATGTACGACCTGCAGTACCAGGGCGGCCACAAGGAGGCACCCAGCCCCACCTGCCCAGA
CCTGGGCACCAAGAGCCACCCTCCTGACAAGTGGGCCCACGGAGCTGCAGCCAAAGGCTACCTCGGGGCC
GTGAAGCCCTTGGGGGGAGGGGCAGGAGCTCCAGGCAAGGGCTCGGAAAAGGGCCCCCCCAATGGCATGA
CACCAGCCCCTAAGGAGGCAGTGACCGGTAATGGTATTGGGGGCAAGATGAAAATCGTCAAGAACAAGAA
CAAGAATGGGCGCATCGTGATCGTTATGAGCAAGTACATGGAGAACGGCATGCAGGCAGTGAAAATCAAG
TCGGGCGAGGCCGCCGAGGGCGAGGCGCGCTCCCCCAGCCACAAGAAACGTGCTGCCGAGGAGCGCCATC
CCCAGGGCGACAGGACTTTTAAAAAGGCAGCCGGTGCCTCTGAGGAGAAGAAAGCCGAAGTGCCCTGCAA
ACGCAGGGAGGAGGAGGCTCTGGTGTCGGGGGACGCGCAGCCCCAGGACCTAGGGTCTCGAAAGCTCTCC
CCGACCAAGGAGGCCTTTGGTGAGCAACCGCTACAGCTCACCACCAAGCCAGACCTGCTGGCCTGGGACC
CAGCCAGGAGCTCGCACCCGCCCGCCCACCACCACCATCACCACCACCATCACCACCACCACCATACGGT
GGGCCTGAACCTCTCCCATGCGCGCAAGCGCTGCCTCTCCGAGACCCATGGGGAGCGTGAGCCCTGTAAG
AAGCGGTTGACCGCCCGCAGCATCAGCACGCCGACCTGCCTGGGGGGCAGCCCGGTCTCCGAGCACCCTG
CCAACGTATCCCCCACCGCGGCCTCTCTGCCGCAGCCCGAGGTCATCCTTTTAGACTCAGACCTGGATGA
ACCCATAGACTTGCGCTGTGTCAAGATGCGCAGCGACGCCGGGGAACCGCCCAGCACCCTCCAGGTGAAG
CCCGAGGCTCCAGCTGTGGCGGCAGTGGTGGCGCCGGCCCCTGCCTCAGAGAAGCCTCCCGCTGAGGCCC
AGGAGGAGCCAGTGGAGCCCTTGAGTGAGTTCAAGCCCTTCTTTGGGAATATAATTATCACTGACGTCAC
GGCGAACTGCCTTACCGTCACTTTCAAGGAATACGTGACGGTGTAG

Translation (551 aa):
MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLMGYR
KRGPKPKPLVVQVPTFARRSNVLTGLQDSSADNRAKLELGTQGKGQGHQYELNSKKHHQYQPHSKERSGK
PPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEAPSPTCPDLGTKSHPPDKWAHGAAAKGYLGA
VKPLGGGAGAPGKGSEKGPPNGMTPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIK
SGEAAEGEARSPSHKKRAAEERHPQGDRTFKKAAGASEEKKAEVPCKRREEEALVSGDAQPQDLGSRKLS
PTKEAFGEQPLQLTTKPDLLAWDPARSSHPPAHHHHHHHHHHHHHTVGLNLSHARKRCLSETHGEREPCK
KRLTARSISTPTCLGGSPVSEHPANVSPTAASLPQPEVILLDSDLDEPIDLRCVKMRSDAGEPPSTLQVK
PEAPAVAAVVAPAPASEKPPAEAQEEPVEPLSEFKPFFGNIIITDVTANCLTVTFKEYVTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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