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Report for CCDS49775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49775.1 Public Mus musculus 16 Igll1 23 108 98 CCDS HistoryNCBI Gene:16136Re-query CCDS DB by CCDS ID:49775.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100136.3 ENSMUSP00000097713.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100136.3Link to Ensembl Protein Viewer:ENSMUSP00000097713.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100136Re-query CCDS DB by Protein ID:ENSMUSP00000097713
Original member Current member NCBI NM_001190325.1 NP_001177254.1 Accepted alive Link to Nucleotide Sequence:NM_001190325.1Link to Protein Sequence:NP_001177254.1Re-query CCDS DB by Nucleotide ID:NM_001190325Re-query CCDS DB by Protein ID:NP_001177254Link to BLAST:NP_001177254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177254.1 209 P20764 209 100% 0 0

Chromosomal Locations for CCDS 49775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16860815 16861134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16862429 16862544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16863696 16863889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGAAGCTCAGAGTAGGACAGACTCTGGGCACTATCCCCAGGCAGTGTGAAGTTCTCCTCCTGCTGCTGC
TGTTGGGTCTAGTGGATGGTGTCCACCACATACTTTCCCCAAGCTCAGCAGAAAGGAGCAGAGCTGTGGG
CCCTGGAGCTTCAGTGGGAAGCAACAGGCCTAGCCTATGGGCCCTTCCCGGCAGGCTCCTGTTCCAGATC
ATCCCACGGGGAGCAGGTCCCAGGTGCTCGCCCCATAGGCTTCCATCTAAGCCCCAGTTTTGGTATGTCT
TTGGTGGTGGGACCCAGCTCACAATCCTAGGTCAGCCCAAGTCTGACCCCTTGGTCACTCTGTTCCTGCC
TTCCTTAAAGAATCTTCAGGCCAACAAGGCCACACTAGTGTGTTTGGTGAGCGAATTCTACCCAGGTACT
TTGGTGGTGGACTGGAAGGTAGATGGGGTCCCTGTCACTCAGGGTGTAGAGACAACCCAACCCTCCAAAC
AGACCAACAACAAATACATGGTCAGCAGCTACCTGACACTGATATCTGACCAGTGGATGCCTCACAGTAG
ATACAGCTGCCGGGTCACTCATGAAGGAAACACTGTGGAGAAGAGTGTGTCACCTGCTGAGTGTTCTTAG

Translation (209 aa):
MKLRVGQTLGTIPRQCEVLLLLLLLGLVDGVHHILSPSSAERSRAVGPGASVGSNRPSLWALPGRLLFQI
IPRGAGPRCSPHRLPSKPQFWYVFGGGTQLTILGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGT
LVVDWKVDGVPVTQGVETTQPSKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHEGNTVEKSVSPAECS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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