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Report for CCDS51406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51406.1 Public Mus musculus 4 Perm1 23 108 98 CCDS HistoryNCBI Gene:74183Re-query CCDS DB by CCDS ID:51406.1Re-query CCDS DB by GeneID:74183See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105572.2 ENSMUSP00000101197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105572.2Link to Ensembl Protein Viewer:ENSMUSP00000101197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105572Re-query CCDS DB by Protein ID:ENSMUSP00000101197
Original member Current member NCBI NM_172417.3 NP_766005.2 Accepted alive Link to Nucleotide Sequence:NM_172417.3Link to Protein Sequence:NP_766005.2Re-query CCDS DB by Nucleotide ID:NM_172417Re-query CCDS DB by Protein ID:NP_766005Link to BLAST:NP_766005.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766005.2 807 Q149B8 807 100% 0 0

Chromosomal Locations for CCDS 51406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 156217001 156219185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156219741 156219866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156220110 156220222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGGACAACTTCCAGTACAGCGTCCAGCTCAGCGATCGGGAGTGGGCCGAGTTTTCAGCCACTGCTGATG
AGTGTGGCCTCTTGCAGGCTGACCTGGCCTCTGGTGACGAGCCCTTGTCCAGTGACATTGACCAAGGGGA
CAGCAGTGGAAGCAGCCCCCCTGGGCCCCCACCCCTCTTCACTGGGCAGCTGGTTTCCCAAGGGAGGGGA
CAACAGAGCCGTGAGTTGGAGGACGTGGCTGCTCAGCAGCTGGTCAGCAGGTCTCAGTGTGAGCCTGTCC
TGGCTCTGGAGGCCAGTCATCAGGTAGCCGGCACGTCCACACAGTCAGAGGCCCCTCTGTTCCCCAGCTT
AGACAGTGTCTGTCCTGGCCAGGCCTTGTCCTTTCCAGGGCCGGCAACTTGCAGAGACAAGATGCAGAGG
CTTTTGCAAGGCCCTGCCCCTAGCTCTCCCAGTAAAGCCCCTCATAGTCCTGAGTCCCCTGGCCATAGCG
ACAACCCTCAGAGTTCCCCTGACAGCCTCGAAGCTTCACCGCGGAACCCTGGTCGTAAGAAGAGGCGTGC
TGTAGGTGCCAAGGGGACCAAGCACTCCGGATCTCTGGACTCTGCTGCTACCCAGATGAGCTCCCCACAG
CTTACCAGGCCCAAGGAGGCTCTCATGTCTGGGACACTGATGGCAAAAGCCCAGCAGGATAAGCCACAGC
CTGACTCCACGAGTCCTGAACAGATGGCCAGAGAGGAGTCAGGCTTGGATCTTTCTACACCTATTCTGAT
AACTGAACAAGATCAGATCAGAAAGACATCCAGAGCTGCGTTACATGTGGTATCCAAACCTGTCCAGGAA
GTTCACCCAGATGTCCCCATGGCCTCACCAAATGTGTCTACACGTGCCTCCAAGCCTCAACCCGACGTGG
CTTTGCCTAAACCTGCCTCCAAGCCGCAGTCTGACATAGCTTCGTCTACACATCCCTTCACGCCTGACGT
GTCTTTGTCCACACTTGCCTTCAAATGTCAACCCAATACAAATCAGTCTACACCCGCCTCTGAGCCTGAC
ATGGCTTTGTCTACACCTGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGG
CTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTAGGTCGCAACTGGTGAA
GGCTGAATTTGCGTCTGCTTGCACACCTGGATTGCATGTGGACCTCTCTGCAGCAGGCTCAGAGATCAAG
CCAGAAGTTTCTTCCTCTATGCCTGCCGCAGTGGATGTGCTTCGTACAGATCTGCCTCGTTCTGTTTCAA
AGACTGAGTCTAAAGAGAGTGTGTCTATACCTGTTAAGCCTTCTTTATCCCCTATTTCCCAGGCTGAAGC
TGCCATGGTGGATACAGGTGTGTCTGTACCTCCAGGGGGAAGCATTGAGAAGCCAGCAGGGCAGTTCTCA
GCAGGGTCCTCAGGAGAGTCCTGCCTAGGTCCCGTCCAAGCCCCCAAGAAGAAGAAAGTACGATTTTCCA
TGGCTATCCCCAGCCATGAAGACTCAGGGTCAGGGGAGCCTACAGGTTCACCCTTCCTAACCCCGGAGCA
GCCCCCAGTTCCCAGGACAGCAGCAGGAAGCCGTGGGGGGTCTGCAGCCTGGGATGCTGTGGCTGTCGCG
CCCCGACTCCCCCAGCCTCGGATCCTCAAGCACCTGCCTCCTCCTGTATCCTCTGTATCAGCAGAGGCTG
AGTCTGGAAACTGCTTTGCAGTGACTCTCCCTGAGGCCTACGAGTTCTTCTTCTGTGACACCATTGAGGA
GGAAGATGAAGACGTAGAGGACGAAGAGGCAGCCAGCCAAGCCCTGGATGAAGTCCAATGGCCTGACACA
TGCGAGTTTTTTTTTCGGGATAGCAGAGCCCAAAGATCAAGATGTCAGAGGGGACACTCTCCAGTCTCAC
CACCAAGAGCAGACACCGTGGCACCTGTCCCCCCTGAAGGCTTGGTGCCTATTTCCATCCCTGAGGTCTA
TGAACACTTCTTCACTGAGGAAGGATTTGGGCACAGACAGCCTGCGGCCACTCCTATGCAGACCTCAGAG
CTTTCCAGGGAAGGAGGGCTTGAGGCATCCACCAAGCCTGTTTCACCTACAGCGGAACATCTTAGCTTAA
CAGTCAGGAAGGCAGGGGAACTACGGAGCCCCCTCACTTCATTTACGTTCAGTCAAAACGACATGTGCCT
GGTGTTTGTTGCCTTTGCCACTTGGGCTGTGAGAACCTCAGATCTACAAGCCCCAGATGCTTGGAAAACA
GTCTTGCTCGCCAACATTGGCACCATCTCTGCTATCCGCTACTTCCGCCGTCAGGTTGGGAGAGGCCATA
GTGGCAGACCGAGATCCAGTTCCAGCTCAAACCCCAGCTGCTAG

Translation (807 aa):
MDNFQYSVQLSDREWAEFSATADECGLLQADLASGDEPLSSDIDQGDSSGSSPPGPPPLFTGQLVSQGRG
QQSRELEDVAAQQLVSRSQCEPVLALEASHQVAGTSTQSEAPLFPSLDSVCPGQALSFPGPATCRDKMQR
LLQGPAPSSPSKAPHSPESPGHSDNPQSSPDSLEASPRNPGRKKRRAVGAKGTKHSGSLDSAATQMSSPQ
LTRPKEALMSGTLMAKAQQDKPQPDSTSPEQMAREESGLDLSTPILITEQDQIRKTSRAALHVVSKPVQE
VHPDVPMASPNVSTRASKPQPDVALPKPASKPQSDIASSTHPFTPDVSLSTLAFKCQPNTNQSTPASEPD
MALSTPASEPDTALSTPASEPDTALSTPASEPDTALSTPASRSQLVKAEFASACTPGLHVDLSAAGSEIK
PEVSSSMPAAVDVLRTDLPRSVSKTESKESVSIPVKPSLSPISQAEAAMVDTGVSVPPGGSIEKPAGQFS
AGSSGESCLGPVQAPKKKKVRFSMAIPSHEDSGSGEPTGSPFLTPEQPPVPRTAAGSRGGSAAWDAVAVA
PRLPQPRILKHLPPPVSSVSAEAESGNCFAVTLPEAYEFFFCDTIEEEDEDVEDEEAASQALDEVQWPDT
CEFFFRDSRAQRSRCQRGHSPVSPPRADTVAPVPPEGLVPISIPEVYEHFFTEEGFGHRQPAATPMQTSE
LSREGGLEASTKPVSPTAEHLSLTVRKAGELRSPLTSFTFSQNDMCLVFVAFATWAVRTSDLQAPDAWKT
VLLANIGTISAIRYFRRQVGRGHSGRPRSSSSSNPSC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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