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Report for CCDS49824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49824.1 Public Mus musculus 16 Pigx 23 108 98 CCDS HistoryNCBI Gene:72084Re-query CCDS DB by CCDS ID:49824.1Re-query CCDS DB by GeneID:72084See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 49824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000155966.7 ENSMUSP00000114854.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155966.7Link to Ensembl Protein Viewer:ENSMUSP00000114854.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155966Re-query CCDS DB by Protein ID:ENSMUSP00000114854
Original member Current member EBI ENSMUST00000189013.6 ENSMUSP00000141122.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189013.6Link to Ensembl Protein Viewer:ENSMUSP00000141122.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189013Re-query CCDS DB by Protein ID:ENSMUSP00000141122
Original member Current member NCBI NM_001111025.1 NP_001104495.1 Accepted alive Link to Nucleotide Sequence:NM_001111025.1Link to Protein Sequence:NP_001104495.1Re-query CCDS DB by Nucleotide ID:NM_001111025Re-query CCDS DB by Protein ID:NP_001104495Link to BLAST:NP_001104495.1

Chromosomal Locations for CCDS 49824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32084483 32084626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32085237 32085337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32087294 32087507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32092344 32092485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32097000 32097063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32099476 32099569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (759 nt):
CTGGCTGCCGGCGCTGTGGCCTGGCTGCTCCTTTGGGCAGCCTGGCTGGTCGGCAGGCTCGCCGCGGACT
TCAGCGACGCCCCTTTCAGCGCTGGTGTAAGGGCCACTTGTTCTGAAATTATTTTAAGGCAAGAATTTTT
GAAAGATGGTTTCCACAGAGACCTTTTAATAAAAGTGAAATTTGGAGAGAGCATTGAGGACCTACAGACC
TGCCGGCTCCTAATTAAGCATTACATTCCACCAGGACTCTTTGTGGATCCCTATGAGTTGGCTTCACTAC
GAGAAAGGAACTTAACAGAGGCAGTGATGCTATCAGAAAGTTTTAATATAGAAGCCCCCAACTACTTGTC
CAATGAATCTGCAGTCCTCATTTATGCCCGGCAGGATGCACAGTGCATCGACTGCTTCCAGGCCTTTTTA
CCTGTGCACTATCGCTATCACCGGCCACATAAGAAAGATGGAGACACCCTCATTGTGGTCAACAACCCCG
ACTTACTGATGTACTGTGACCAAGAGTTTCCAATTTTGAAATGCTGGGCTCAGTCAGAAGTAGCAGCTCC
TTGTGCTTTGAAGAGTGAGGAGATCTGCCAGTGGAAAAGCATGCAGTACAAATCAATACTTAAGAATTTG
ACAGTGCAGGTTCCAGTGGGACTGACTATACATACCTCTTTAGTGTGTTCTGTGACGCTGCTCATTACGA
TTCTGTGTTCTACTTTGATCCTTTTAGCTGTTTTCAAATATGGCCACTTTTCCCTGTAA

Translation (252 aa):
MAAGAVAWLLLWAAWLVGRLAADFSDAPFSAGVRATCSEIILRQEFLKDGFHRDLLIKVKFGESIEDLQT
CRLLIKHYIPPGLFVDPYELASLRERNLTEAVMLSESFNIEAPNYLSNESAVLIYARQDAQCIDCFQAFL
PVHYRYHRPHKKDGDTLIVVNNPDLLMYCDQEFPILKCWAQSEVAAPCALKSEEICQWKSMQYKSILKNL
TVQVPVGLTIHTSLVCSVTLLITILCSTLILLAVFKYGHFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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