NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28021.1 Public Mus musculus 16 Comt 23 108 98 CCDS HistoryNCBI Gene:12846Re-query CCDS DB by CCDS ID:28021.1Re-query CCDS DB by GeneID:12846See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000335.11 ENSMUSP00000000335.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000335.11Link to Ensembl Protein Viewer:ENSMUSP00000000335.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000000335Re-query CCDS DB by Protein ID:ENSMUSP00000000335
Original member Current member EBI ENSMUST00000115609.9 ENSMUSP00000111272.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115609.9Link to Ensembl Protein Viewer:ENSMUSP00000111272.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115609Re-query CCDS DB by Protein ID:ENSMUSP00000111272
Original member Current member EBI ENSMUST00000165430.7 ENSMUSP00000130077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165430.7Link to Ensembl Protein Viewer:ENSMUSP00000130077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165430Re-query CCDS DB by Protein ID:ENSMUSP00000130077
Original member Current member NCBI NM_001111062.1 NP_001104532.1 Accepted alive Link to Nucleotide Sequence:NM_001111062.1Link to Protein Sequence:NP_001104532.1Re-query CCDS DB by Nucleotide ID:NM_001111062Re-query CCDS DB by Protein ID:NP_001104532Link to BLAST:NP_001104532.1
Original member Current member NCBI NM_001111063.1 NP_001104533.1 Accepted alive Link to Nucleotide Sequence:NM_001111063.1Link to Protein Sequence:NP_001104533.1Re-query CCDS DB by Nucleotide ID:NM_001111063Re-query CCDS DB by Protein ID:NP_001104533Link to BLAST:NP_001104533.1
Original member Current member NCBI NM_007744.3 NP_031770.2 Accepted alive Link to Nucleotide Sequence:NM_007744.3Link to Protein Sequence:NP_031770.2Re-query CCDS DB by Nucleotide ID:NM_007744Re-query CCDS DB by Protein ID:NP_031770Link to BLAST:NP_031770.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104532.1 265 O88587-1 265 100% 0 0
NP_001104533.1 265 O88587-1 265 100% 0 0
NP_031770.2 265 O88587-1 265 100% 0 0

Chromosomal Locations for CCDS 28021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18407837 18408040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18410683 18410814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18411127 18411320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18411690 18411957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGCTGTTGGCTGCTGTCTCATTGGGTCTCCTGTTGCTGGCCTTCCTCCTGCTCCTGCGACACCTAGGCT
GGGGCTTGGTGGCTATTGGTTGGTTTGAGTTCGTGCAGCAGCCGGTCCACAACCTGCTCATGGGTGGCAC
AAAGGAGCAGCGCATCCTGCGCCATGTGCAGCAACACGCAAAGCCTGGAGACCCCCAGAGCGTCCTGGAG
GCCATTGATACCTACTGCTCAGAGAAGGAGTGGGCCATGAACGTGGGTGACGCAAAAGGCCAAATCATGG
ATGCAGTGATTCGGGAGTACAGGCCCTCGCTGGTGCTGGAGCTAGGAGCTTATTGTGGCTACTCAGCCGT
GCGAATGGCCCGCCTGCTGCCACCTGGAGCCAGGCTTCTCACCATGGAGATTAACCCTGACTACGCTGCC
ATCACCCAGCAAATGCTGGACTTCGCAGGCCTACAGGACAAAGTTTCCATCCTCATCGGGGCATCCCAGG
ACCTTATCCCCCAGCTGAAGAAGAAGTACGATGTGGACACATTAGACATGGTCTTTCTTGACCACTGGAA
AGACCGCTACCTTCCAGACACACTTCTCCTGGAGGAATGTGGCCTGCTGCGCAAGGGGACGGTGCTCCTA
GCTGACAATGTCATTGTCCCGGGAACCCCTGACTTCCTGGCGTATGTGAGGGGGAGCAGCAGCTTCGAGT
GCACACACTACAGCTCATACCTGGAGTACATGAAAGTGGTGGACGGCTTGGAGAAGGCAGTCTACCAGGG
TCCAGGCAGCAGCCCCGTGAAGTCCTGA

Translation (265 aa):
MLLAAVSLGLLLLAFLLLLRHLGWGLVAIGWFEFVQQPVHNLLMGGTKEQRILRHVQQHAKPGDPQSVLE
AIDTYCSEKEWAMNVGDAKGQIMDAVIREYRPSLVLELGAYCGYSAVRMARLLPPGARLLTMEINPDYAA
ITQQMLDFAGLQDKVSILIGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLL
ADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAVYQGPGSSPVKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH