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Report for CCDS30050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30050.1 Public Mus musculus X Zfp300 23 108 98 CCDS HistoryNCBI Gene:245368Re-query CCDS DB by CCDS ID:30050.1Re-query CCDS DB by GeneID:245368See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040667.12 ENSMUSP00000046514.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040667.12Link to Ensembl Protein Viewer:ENSMUSP00000046514.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040667Re-query CCDS DB by Protein ID:ENSMUSP00000046514
Original member Current member NCBI NM_183185.3 NP_899008.2 Accepted alive Link to Nucleotide Sequence:NM_183185.3Link to Protein Sequence:NP_899008.2Re-query CCDS DB by Nucleotide ID:NM_183185Re-query CCDS DB by Protein ID:NP_899008Link to BLAST:NP_899008.2

Chromosomal Locations for CCDS 30050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 21081586 21083291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21083908 21084000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21084216 21084354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGCAATTACAGGAATCAGTGTCATTTGAGGATGTGTCTGTGGACTTCACTCAGGAAGAATGGAATCAAC
TGGACCCTATTCAGAGGAGCCTATACAGAGATGTGATGCTAGAGAACTATAGTCATCTTGTCTCTCTGGG
GTATCCTATTACCAAACCAGAAGTGATCGCCTCTTTAGAGAAAGGAGTCCTTGGGATAATAAAGAGAGAA
ATTCCAAGTTCAAGTTGCACAGAAGATGGTCAAGCTGAATACAACTTGGCATGGCATCAGAAAAATCAAA
ATATGCACCTGGAGCAAGCTATATCCATTATTGAGAAAAATGTAACTGAAGAAAGAAGTTATGAATATGA
TGGATTTGTAAGCCCACTTTCTCAGAGCACATGGGTAGTTTCTTCAGGACCCACACCCTATATGAATAAC
TCATTTGGAGAAAGTATTAAAAATAATTTAGGTTTAGTCAATCCTAGTAGTATGAGCTTTGCAGCTCAGG
AATGTTATGAATGTAATAGATGTAGGAAATTATTAATTCCTGGCAGACATGAGATAAGTGACAGAATGAA
ATCCCAGGAGCATAATATGTTTGGAAAAGAGCATATTTATAACTTTGTTCAGCATGACTTGACTCAACTT
GGAGACAAAACCTATGAATGTCCTGAGTGTAGAATAACCCTTAGCCCAAGTTCATTCCTTGTTGTTCATC
AGATCACTCACATAGGAGAAAAGCCTTATGAATGGGCAAGATGCAGAGAAGCATTCAACAACACAGCACA
CCTCAGTCTACATCAAACAATGCACACAGGAGACAAGCTTTTTGAATGTAATGAATGTGGCAAGTCCTTC
AGAGAGGAGTCAACACTGCATATACATCAAAGAACACATACAGGTGAAAAACCATATATATGTACTGAGT
GTGGCAATGCTTTTCAAGAAAAGACAAATCTTATCATACATCGGAGAACTCACAAAGGAGAGAAGCCCTA
TAAATGTACAGATTGTGAGAAAACCTTCAACCAAAAAGCTCATCTTAATGTACATCAGAGAACACACACA
GGAGAAAAACCTTTTGAATGTACCAATTGTGGCAAGTACTTCAGAGAGAAATCAACTCTGAATATACATC
AAAGAACTCATACAGGAGAGAAACCATATGTATGCAATGAGTGTGGCAAAGCCTTCAGAGAAAAGACAAA
ACTCATTATACATCAGAGAACTCACACAGGAGAAAAACCCTATGAATGTTCAGAATGTGGGAGAGCATTT
AACCAAAAGGCACACCTCAGTGTACATCAGAGAACACACACAGGAGAGAAACCTTTTGAATGCAATGAAT
GTGGCAAAGCTTTCAGAGAAAAGTCAACACTGCGCAGACATCAAAGAATTCACACAGGAGAAAAACCTTA
TGTGTGTTCAGAATGTGGAAGAGCCTTTACCCTTAAGCTAAGCCTTAGTGCTCACCAGAGAATTCATACA
GGGGAAAAAACAGATGGATGTACTGTATGTGGAAAAGTCTTCTCCCGGAAGTCATACCTCATGTTACATC
AGAGAGCTCATACAAAAGAAAGACTTGAAAAATCATATGAATGCAATGAATGTGATAAAGCATTCTTACA
GAAATCATATCTCATTATTCATCAGAGGGTTCATGCAGGAGAGAAACCCTATGAATGTAATATATGTGAG
AAATCTTTCTCCCAAAAATCATATCTCATTATTCATCAAAGAATCCATACAGGAGAGAAACCGTATCAAT
GTGATAAGTGTAGCAGAGCCTTCAGAGAGAAGTCCAAACTCACTGTGCATCAAAGAACTCACATAGGAGA
GAAACCCTATGACTGCCCTGAATTGGAAAGAAACTTTCCAGAGATCAAAGTTCCTCATGGATTAGAGAAC
TCAGAGATGAAAGAAAACAAAGAACTGAAAATGGAAAATCTGTCATAG

Translation (645 aa):
MQLQESVSFEDVSVDFTQEEWNQLDPIQRSLYRDVMLENYSHLVSLGYPITKPEVIASLEKGVLGIIKRE
IPSSSCTEDGQAEYNLAWHQKNQNMHLEQAISIIEKNVTEERSYEYDGFVSPLSQSTWVVSSGPTPYMNN
SFGESIKNNLGLVNPSSMSFAAQECYECNRCRKLLIPGRHEISDRMKSQEHNMFGKEHIYNFVQHDLTQL
GDKTYECPECRITLSPSSFLVVHQITHIGEKPYEWARCREAFNNTAHLSLHQTMHTGDKLFECNECGKSF
REESTLHIHQRTHTGEKPYICTECGNAFQEKTNLIIHRRTHKGEKPYKCTDCEKTFNQKAHLNVHQRTHT
GEKPFECTNCGKYFREKSTLNIHQRTHTGEKPYVCNECGKAFREKTKLIIHQRTHTGEKPYECSECGRAF
NQKAHLSVHQRTHTGEKPFECNECGKAFREKSTLRRHQRIHTGEKPYVCSECGRAFTLKLSLSAHQRIHT
GEKTDGCTVCGKVFSRKSYLMLHQRAHTKERLEKSYECNECDKAFLQKSYLIIHQRVHAGEKPYECNICE
KSFSQKSYLIIHQRIHTGEKPYQCDKCSRAFREKSKLTVHQRTHIGEKPYDCPELERNFPEIKVPHGLEN
SEMKENKELKMENLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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