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Report for CCDS48200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48200.1 Public Homo sapiens Y ZFY 24 110 108 CCDS HistoryNCBI Gene:7544Re-query CCDS DB by CCDS ID:48200.1Re-query CCDS DB by GeneID:7544See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000625061.3 ENSP00000485605.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000625061.3Link to Ensembl Protein Viewer:ENSP00000485605.1Re-query CCDS DB by Nucleotide ID:ENST00000625061Re-query CCDS DB by Protein ID:ENSP00000485605
Original member Current member NCBI NM_001145276.2 NP_001138748.1 Accepted alive Link to Nucleotide Sequence:NM_001145276.2Link to Protein Sequence:NP_001138748.1Re-query CCDS DB by Nucleotide ID:NM_001145276Re-query CCDS DB by Protein ID:NP_001138748Link to BLAST:NP_001138748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138748.1 610 P08048-2 610 100% 0 0

Chromosomal Locations for CCDS 48200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 2953937 2953997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2975095 2975244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2975511 2975654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2976670 2976822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2977940 2978080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2978810 2979993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGGATGAAGATGAATTTGAATTGCAGCCACAAGAGCCAAACTCATTTTTTGATGGAATAGTGGATGATG
CTGGCAAAATAGAACATGATGGTTCCACTGGAGTGACCATCGATGCAGAATCAGAAATGGATCCTTGTAA
AGTGGATAGCACTTGTCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGACCCTGGAGAAGATGACTTA
GGTGGAACTGTAGACATTGTGGAGAGTGAACCTGAAAATGATCATGGAGTTGAACTACTTGATCAGAACA
GCAGTATTCGTGTTCCCAGGGAAAAGATGGTTTATATGACTGTCAATGACTCTCAACAAGAAGATGAAGA
TTTAAATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCTGTT
GCAGCAGCAGCAGCTGCTGTGCATGAGCAGCAAATTGATGAGGATGAAATGAAAACCTTCGTACCAATTG
CATGGGCAGCAGCTTATGGTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTT
GCACATAGATGAGTCTGCTGGCCTTGGCAGACTGGCTAAACAGAAACCAAAGAAAAAGAGAAGACCTGAT
TCCAGGCAGTACCAAACAGCAATAATTATTGGCCCTGATGGTCATCCTTTGACTGTCTATCCTTGCATGA
TTTGTGGGAAGAAGTTTAAGTCGAGGGGTTTTTTGAAAAGACACATGAAAAACCATCCTGAACACCTTGC
CAAGAAGAAGTACCACTGTACTGACTGTGATTACACTACCAATAAGAAGATAAGTTTACATAACCACCTG
GAGAGCCACAAGCTGACCAGCAAGGCAGAGAAGGCCATTGAATGTGATGAGTGTGGGAAGCATTTTTCTC
ATGCAGGGGCTTTGTTTACTCACAAAATGGTGCATAAGGAAAAAGGGGCCAACAAAATGCACAAGTGTAA
ATTCTGTGAATATGAGACAGCTGAACAGGGGTTATTGAATCGCCACCTCTTGGCAGTCCACAGCAAGAAC
TTTCCTCATATTTGTGTGGAGTGTGGTAAAGGTTTCCGACACCCGTCGGAACTGAGAAAGCACATGCGAA
TCCATACCGGCGAGAAGCCATACCAATGCCAGTACTGTGAATATAGGTCTGCAGACTCTTCTAACTTGAA
AACACATATAAAAACAAAGCATAGTAAAGAGATGCCATTCAAGTGTGACATTTGTCTTCTGACTTTCTCA
GATACCAAAGAAGTGCAGCAACATACTCTTGTCCACCAAGAAAGCAAAACACATCAGTGTTTGCATTGCG
ACCACAAGAGTTCAAACTCAAGTGATTTGAAACGACATGTAATTTCAGTTCATACGAAAGACTATCCTCA
TAAGTGTGAGATGTGCGAGAAAGGCTTTCACAGGCCTTCAGAACTTAAGAAACATGTGGCTGTCCACAAA
GGTAAAAAAATGCACCAATGTAGACATTGTGACTTTAAGATTGCAGACCCATTTGTTCTAAGTCGCCATA
TTCTCTCAGTTCACACAAAGGATCTTCCATTTAGGTGTAAGAGATGTAGAAAGGGATTTAGGCAACAAAA
TGAGCTTAAAAAGCATATGAAGACACACAGTGGCAGGAAAGTATATCAGTGTGAGTACTGTGAGTATAGC
ACTACAGATGCCTCAGGCTTTAAACGGCACGTTATTTCCATTCATACAAAAGACTATCCTCATCGGTGTG
AGTACTGCAAGAAAGGCTTCCGAAGACCTTCAGAAAAGAACCAGCACATAATGAGACACCATAAAGAAGT
TGGTCTGCCCTAA

Translation (610 aa):
MDEDEFELQPQEPNSFFDGIVDDAGKIEHDGSTGVTIDAESEMDPCKVDSTCPEVIKVYIFKADPGEDDL
GGTVDIVESEPENDHGVELLDQNSSIRVPREKMVYMTVNDSQQEDEDLNVAEIADEVYMEVIVGEEDAAV
AAAAAAVHEQQIDEDEMKTFVPIAWAAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPKKKRRPD
SRQYQTAIIIGPDGHPLTVYPCMICGKKFKSRGFLKRHMKNHPEHLAKKKYHCTDCDYTTNKKISLHNHL
ESHKLTSKAEKAIECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKN
FPHICVECGKGFRHPSELRKHMRIHTGEKPYQCQYCEYRSADSSNLKTHIKTKHSKEMPFKCDICLLTFS
DTKEVQQHTLVHQESKTHQCLHCDHKSSNSSDLKRHVISVHTKDYPHKCEMCEKGFHRPSELKKHVAVHK
GKKMHQCRHCDFKIADPFVLSRHILSVHTKDLPFRCKRCRKGFRQQNELKKHMKTHSGRKVYQCEYCEYS
TTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEKNQHIMRHHKEVGLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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