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Report for CCDS49405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49405.1 Public Mus musculus 14 Gm5458 23 108 98 CCDS HistoryNCBI Gene:432825Re-query CCDS DB by CCDS ID:49405.1Re-query CCDS DB by GeneID:432825See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096121.11 ENSMUSP00000093833.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096121.11Link to Ensembl Protein Viewer:ENSMUSP00000093833.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000096121Re-query CCDS DB by Protein ID:ENSMUSP00000093833
Original member Current member NCBI NM_001024706.2 NP_001019877.2 Accepted alive Link to Nucleotide Sequence:NM_001024706.2Link to Protein Sequence:NP_001019877.2Re-query CCDS DB by Nucleotide ID:NM_001024706Re-query CCDS DB by Protein ID:NP_001019877Link to BLAST:NP_001019877.2

Chromosomal Locations for CCDS 49405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 19594458 19594463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19599546 19599729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19600404 19600535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19601494 19601656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19602389 19602518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGTTTTCCTGGCTGCTCAGGCTATGTCAGAAAGAGAATGGCGATGAAGGAGACACCAGACCAACAAAGA
AG
GAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATCATTCTGGAGAAGGCACAGGTCTGCTAG
A
AATACTTCAACCCAAAATTCCAACATCACTAATCAGATATCAAATATAAATAAAGTTAGAGAATTGAAA
TTG
GATATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACCTTTACATGTATGAGG
AT
TTGAACTACAGGATGAACACTGAATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATAT
G
GATAAAATGACCCAGTCCATAATTGCTTCCATGAAGTTCTCCGAGGAACTGTTAAAAGATAACTATTCC
TAC
AGCATCAAGCAGAAACACCGCCTCCGTGAGTGCACTCAACTAAAGGAAAAAGTGAGGATATTACTGA
AT
GAGAACAGAAAGGTGCTGGTGGAGCAGGCTGGAATGCAAGTGTCCCGTGGGGAAGAAAAGAGGTTCTG
T
GAGGAGGCCAGCAAGAACATGTGTGTCTCAAGTGCCAAGGAGCAGCAGGTGTGA


Translation (204 aa):
MFSWLLRLCQKENGDEGDTRPTKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVRELK
L
DMRKISNDMEEMCGILNLYMYEDLNY
RMNTEFNIIKSQHEKTMLDMDKMTQSIIASMKFSEELLKDNYS
Y
SIKQKHRLRECTQLKEKVRILLNENRKVLVEQAGMQVSRGEEKRFCEEASKNMCVSSAKEQQV



Links Key
 Links to:   History report
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  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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