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Report for CCDS20396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20396.1 Public Mus musculus 6 Il5ra 23 108 98 CCDS HistoryNCBI Gene:16192Re-query CCDS DB by CCDS ID:20396.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167925.2 ENSMUSP00000129781.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167925.2Link to Ensembl Protein Viewer:ENSMUSP00000129781.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167925Re-query CCDS DB by Protein ID:ENSMUSP00000129781
Original member Current member EBI ENSMUST00000204659.2 ENSMUSP00000144718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204659.2Link to Ensembl Protein Viewer:ENSMUSP00000144718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204659Re-query CCDS DB by Protein ID:ENSMUSP00000144718
Original member Current member NCBI NM_008370.2 NP_032396.1 Accepted alive Link to Nucleotide Sequence:NM_008370.2Link to Protein Sequence:NP_032396.1Re-query CCDS DB by Nucleotide ID:NM_008370Re-query CCDS DB by Protein ID:NP_032396Link to BLAST:NP_032396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032396.1 415 P21183 415 100% 0 0

Chromosomal Locations for CCDS 20396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 106712382 106712465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106715619 106715703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106716697 106716790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106731793 106731931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106735705 106735850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106738096 106738283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106738360 106738513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106741134 106741272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106742652 106742797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 106744264 106744336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGTGCCTGTGTTACTAATTCTTGTGGGAGCTTTGGCAACACTGCAAGCTGACTTACTTAATCACAAAA
AGTTTTTACTTCTACCACCTGTCAATTTTACCATTAAAGCCACTGGATTAGCTCAAGTTCTTTTACACTG
GGACCCAAATCCTGACCAAGAGCAAAGGCATGTTGATCTAGAGTATCACGTGAAAATAAATGCCCCACAA
GAAGACGAATATGATACCAGAAAGACTGAAAGCAAATGTGTGACCCCCCTTCATGAAGGCTTTGCAGCTA
GCGTGAGGACCATTCTGAAGAGCAGCCATACAACTCTGGCCAGCAGTTGGGTTTCTGCTGAACTCAAAGC
TCCACCAGGATCTCCTGGAACCTCGGTTACGAATTTAACTTGTACCACACACACTGTTGTAAGTAGCCAC
ACCCACTTAAGGCCATACCAAGTGTCCCTTCGTTGCACCTGGCTTGTTGGGAAGGATGCCCCTGAGGACA
CACAGTATTTCCTATACTACAGGTTTGGTGTTTTGACTGAAAAATGCCAAGAATACAGCAGAGATGCACT
GAACAGAAATACTGCATGCTGGTTTCCCAGGACATTTATCAACAGCAAAGGGTTTGAGCAGCTTGCTGTG
CACATTAATGGCTCAAGCAAGCGTGCTGCAATCAAGCCCTTTGATCAGCTGTTCAGTCCACTTGCCATTG
ACCAAGTGAATCCTCCAAGGAATGTCACAGTGGAAATTGAAAGCAATTCTCTCTATATACAGTGGGAGAA
ACCACTTTCTGCCTTTCCAGATCATTGCTTTAACTATGAGCTGAAAATTTACAACACAAAAAATGGTCAC
ATTCAGAAGGAAAAACTGATCGCCAATAAGTTCATCTCAAAAATTGATGATGTTTCTACATATTCCATTC
AAGTGAGAGCAGCTGTGAGCTCACCTTGCAGAATGCCAGGAAGGTGGGGCGAGTGGAGTCAACCTATTTA
TGTGGGAAAGGAAAGGAAGTCCTTGGTAGAATGGCATCTCATTGTGCTCCCAACAGCCGCCTGCTTCGTC
TTGTTAATCTTCTCACTCATCTGCAGAGTGTGTCATCTATGGACCAGGTTGTTTCCACCGGTTCCGGCCC
CAAAGAGTAACATCAAAGATCTCCCTGTGGTTACTGAATATGAGAAACCTTCGAATGAAACCAAAATTGA
AGTTGTACATTGTGTGGAAGAGGTTGGATTTGAAGTCATGGGAAATTCCACGTTTTGA

Translation (415 aa):
MVPVLLILVGALATLQADLLNHKKFLLLPPVNFTIKATGLAQVLLHWDPNPDQEQRHVDLEYHVKINAPQ
EDEYDTRKTESKCVTPLHEGFAASVRTILKSSHTTLASSWVSAELKAPPGSPGTSVTNLTCTTHTVVSSH
THLRPYQVSLRCTWLVGKDAPEDTQYFLYYRFGVLTEKCQEYSRDALNRNTACWFPRTFINSKGFEQLAV
HINGSSKRAAIKPFDQLFSPLAIDQVNPPRNVTVEIESNSLYIQWEKPLSAFPDHCFNYELKIYNTKNGH
IQKEKLIANKFISKIDDVSTYSIQVRAAVSSPCRMPGRWGEWSQPIYVGKERKSLVEWHLIVLPTAACFV
LLIFSLICRVCHLWTRLFPPVPAPKSNIKDLPVVTEYEKPSNETKIEVVHCVEEVGFEVMGNSTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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