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Report for CCDS724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
724.1 Public Homo sapiens 1 LRRC8B 24 110 108 CCDS HistoryNCBI Gene:23507Re-query CCDS DB by CCDS ID:724.1Re-query CCDS DB by GeneID:23507See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 724.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330947.7 ENSP00000332674.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330947.7Link to Ensembl Protein Viewer:ENSP00000332674.2Re-query CCDS DB by Nucleotide ID:ENST00000330947Re-query CCDS DB by Protein ID:ENSP00000332674
Original member Current member EBI ENST00000640258.1 ENSP00000491377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640258.1Link to Ensembl Protein Viewer:ENSP00000491377.1Re-query CCDS DB by Nucleotide ID:ENST00000640258Re-query CCDS DB by Protein ID:ENSP00000491377
Original member Current member EBI ENST00000639264.1 ENSP00000492151.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639264.1Link to Ensembl Protein Viewer:ENSP00000492151.1Re-query CCDS DB by Nucleotide ID:ENST00000639264Re-query CCDS DB by Protein ID:ENSP00000492151
Original member Current member NCBI NM_001134476.2 NP_001127948.1 Accepted alive Link to Nucleotide Sequence:NM_001134476.2Link to Protein Sequence:NP_001127948.1Re-query CCDS DB by Nucleotide ID:NM_001134476Re-query CCDS DB by Protein ID:NP_001127948Link to BLAST:NP_001127948.1
Original member Current member NCBI NM_001369817.2 NP_001356746.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369817.2Link to Protein Sequence:NP_001356746.1Re-query CCDS DB by Nucleotide ID:NM_001369817Re-query CCDS DB by Protein ID:NP_001356746Link to BLAST:NP_001356746.1
Original member Current member NCBI NM_001369819.2 NP_001356748.1 Accepted alive Link to Nucleotide Sequence:NM_001369819.2Link to Protein Sequence:NP_001356748.1Re-query CCDS DB by Nucleotide ID:NM_001369819Re-query CCDS DB by Protein ID:NP_001356748Link to BLAST:NP_001356748.1
Original member Current member NCBI NM_015350.4 NP_056165.1 Accepted alive Link to Nucleotide Sequence:NM_015350.4Link to Protein Sequence:NP_056165.1Re-query CCDS DB by Nucleotide ID:NM_015350Re-query CCDS DB by Protein ID:NP_056165Link to BLAST:NP_056165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127948.1 803 Q6P9F7 803 100% 0 0
NP_001356746.1 803 Q6P9F7 803 100% 0 0
NP_001356748.1 803 Q6P9F7 803 100% 0 0
NP_056165.1 803 Q6P9F7 803 100% 0 0

Chromosomal Locations for CCDS 724.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 89582651 89584789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89592771 89593043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGATTACACTAACTGAGCTAAAATGCTTAGCAGATGCCCAGTCATCTTATCACATCTTAAAACCATGGT
GGGACGTCTTCTGGTATTACATCACACTGATCATGCTGCTGGTGGCCGTGCTGGCCGGAGCTCTCCAGCT
GACGCAGAGCAGGGTTCTGTGCTGTCTTCCATGCAAAGTGGAATTTGACAATCACTGTGCCGTGCCTTGG
GACATCCTGAAAGCCAGCATGAACACATCCTCTAATCCTGGGACACCGCTTCCGCTCCCCCTCCGAATTC
AGAATGACCTCCACCGACAGCAGTACTCCTATATTGATGCCGTCTGTTACGAGAAACAGCTCCATTGGTT
TGCAAAGTTTTTCCCCTATCTGGTGCTCTTGCACACGCTCATCTTTGCAGCCTGCAGCAACTTTTGGCTT
CACTACCCCAGTACCAGTTCCAGGCTCGAGCATTTTGTGGCCATCCTTCACAAGTGCTTCGATTCTCCAT
GGACCACCCGCGCCCTTTCAGAAACAGTGGCTGAGCAGTCAGTGAGGCCTCTGAAACTCTCCAAGTCCAA
GATTTTGCTTTCGTCCTCAGGGTGTTCAGCTGACATAGATTCCGGCAAACAGTCATTGCCCTACCCACAG
CCAGGTTTGGAGTCAGCTGGCATAGAAAGCCCAACTTCCAGTGTCCTGGACAAGAAGGAGGGTGAACAGG
CCAAAGCCATCTTTGAAAAAGTGAAAAGATTCCGCATGCATGTGGAGCAGAAGGACATCATTTATAGAGT
ATATCTGAAACAGATAATAGTCAAAGTCATTTTGTTTGTGCTCATCATAACTTATGTTCCATATTTTTTA
ACCCACATCACTCTTGAAATCGACTGTTCAGTTGATGTGCAGGCTTTTACAGGATATAAGCGCTACCAGT
GTGTCTATTCCTTGGCAGAAATCTTTAAGGTCCTGGCTTCATTTTATGTCATTTTGGTTATACTTTATGG
TCTGACCTCTTCCTACAGCCTGTGGTGGATGCTGAGGAGTTCCCTGAAGCAATATTCCTTTGAGGCGTTA
AGAGAAAAAAGCAACTACAGTGACATCCCTGATGTCAAGAATGACTTTGCCTTCATCCTTCATCTGGCTG
ATCAGTATGATCCTCTTTATTCCAAACGCTTCTCCATATTCCTATCAGAGGTCAGTGAGAACAAACTGAA
ACAGATCAACCTCAATAATGAATGGACAGTTGAGAAACTGAAAAGTAAGCTTGTGAAAAATGCCCAGGAC
AAGATAGAACTGCATCTTTTTATGCTCAACGGTCTTCCAGACAATGTCTTTGAGTTAACTGAAATGGAAG
TGCTAAGCCTGGAGCTTATCCCAGAGGTGAAGCTGCCCTCTGCAGTCTCACAGCTGGTCAACCTCAAGGA
GCTTCGTGTGTACCATTCATCTCTGGTCGTAGACCATCCTGCACTGGCCTTTCTAGAGGAGAATTTAAAA
ATCCTCCGCCTGAAATTTACTGAAATGGGAAAAATCCCACGCTGGGTATTTCACCTCAAGAATCTCAAGG
AACTTTATCTTTCGGGCTGTGTTCTCCCTGAACAGTTGAGTACTATGCAGTTGGAGGGCTTTCAGGACTT
AAAAAATCTAAGGACCCTGTACTTGAAGAGCAGCCTCTCCCGGATCCCACAAGTTGTTACAGACCTCCTG
CCTTCATTGCAGAAACTGTCCCTTGATAATGAGGGAAGCAAACTGGTTGTGTTGAACAACTTGAAAAAGA
TGGTCAATCTGAAAAGCCTAGAACTGATCAGCTGTGACCTGGAACGCATCCCACATTCCATTTTCAGCCT
GAATAATTTGCATGAGTTAGACCTAAGGGAAAATAACCTTAAAACTGTGGAAGAGATCATTAGCTTTCAG
CATCTTCAGAATCTTTCCTGCTTAAAGTTGTGGCACAATAACATTGCTTATATTCCTGCACAGATTGGGG
CATTATCTAACCTAGAGCAGCTCTCTTTGGACCATAATAATATTGAGAATCTGCCCTTGCAGCTTTTCCT
ATGCACTAAACTACATTATTTGGATCTAAGCTATAACCACTTGACCTTCATTCCAGAAGAAATCCAGTAT
CTGAGTAATTTGCAGTACTTTGCTGTGACCAACAACAATATTGAGATGCTACCAGATGGGCTGTTTCAGT
GCAAAAAGCTGCAGTGTTTACTTTTGGGGAAAAATAGCTTGATGAATTTGTCCCCTCATGTGGGTGAGCT
GTCAAACCTTACTCATCTGGAGCTCATTGGTAATTACCTGGAAACACTTCCTCCTGAACTAGAAGGATGT
CAGTCCCTAAAACGGAACTGTCTGATTGTTGAGGAGAACTTGCTCAATACTCTTCCTCTCCCTGTAACAG
AACGTTTACAGACGTGCTTAGACAAATGTTGA

Translation (803 aa):
MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGALQLTQSRVLCCLPCKVEFDNHCAVPW
DILKASMNTSSNPGTPLPLPLRIQNDLHRQQYSYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWL
HYPSTSSRLEHFVAILHKCFDSPWTTRALSETVAEQSVRPLKLSKSKILLSSSGCSADIDSGKQSLPYPQ
PGLESAGIESPTSSVLDKKEGEQAKAIFEKVKRFRMHVEQKDIIYRVYLKQIIVKVILFVLIITYVPYFL
THITLEIDCSVDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVILYGLTSSYSLWWMLRSSLKQYSFEAL
REKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVSENKLKQINLNNEWTVEKLKSKLVKNAQD
KIELHLFMLNGLPDNVFELTEMEVLSLELIPEVKLPSAVSQLVNLKELRVYHSSLVVDHPALAFLEENLK
ILRLKFTEMGKIPRWVFHLKNLKELYLSGCVLPEQLSTMQLEGFQDLKNLRTLYLKSSLSRIPQVVTDLL
PSLQKLSLDNEGSKLVVLNNLKKMVNLKSLELISCDLERIPHSIFSLNNLHELDLRENNLKTVEEIISFQ
HLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLHYLDLSYNHLTFIPEEIQY
LSNLQYFAVTNNNIEMLPDGLFQCKKLQCLLLGKNSLMNLSPHVGELSNLTHLELIGNYLETLPPELEGC
QSLKRNCLIVEENLLNTLPLPVTERLQTCLDKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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