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Report for CCDS22387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22387.1 Public Mus musculus 8 Map1s 23 108 98 CCDS HistoryNCBI Gene:270058Re-query CCDS DB by CCDS ID:22387.1Re-query CCDS DB by GeneID:270058See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019405.3 ENSMUSP00000019405.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019405.3Link to Ensembl Protein Viewer:ENSMUSP00000019405.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000019405Re-query CCDS DB by Protein ID:ENSMUSP00000019405
Original member Current member NCBI NM_173013.3 NP_766601.2 Accepted alive Link to Nucleotide Sequence:NM_173013.3Link to Protein Sequence:NP_766601.2Re-query CCDS DB by Nucleotide ID:NM_173013Re-query CCDS DB by Protein ID:NP_766601Link to BLAST:NP_766601.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766601.2 973 Q8C052 973 100% 0 0

Chromosomal Locations for CCDS 22387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70906004 70906127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70910945 70911049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70911846 70911928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70912513 70912653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70912906 70914994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70916351 70916574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70917052 70917207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2922 nt):
ATGGCGGCAGTGATGGCGGCGCCGGAGGCTGTGGAGGCGCCCAGCTCCCTACTGTTGCTGGTGGTGGGTG
GCGAGTGTGGCTGCCCCGGGCTGCTGGCCTACGTCATGGAGGAGTTGGAACGAGGTGTTCGCTCCTGGGA
GGATGTGGACCCCGCTGTCTGCAGCCTGGATGAGCAGCTCAAGGCCTTCGTGTCCCGGCATTCAGCCACC
TTCTCCAGCATTGTGAAAGGGCAGCGGAGCCTGCACCACCGTGGAGAGACCTTGGAGACGCTGGTCCTGC
TGAACCCCTCAGACAAGTCCCTGTGTGATGAGCTCCGGAACCTCCTGATGGACCCCGCCCCTCACAAGCT
GCTGGTCCTGGCCGGGCCCTGCCTGGAGGAGACTGGGGAACTGCTGTTGCAGACTGGGGGGTTCTCGGCC
CACCACTTCCTGCAGGTGCTGGGGGACAAAGAGGTCCAGGATGCACTGGCCTCAGCACCAGCTGCCCCAG
CCCTCACTGTGTCCTGTCCAACCTTTGGGGACTGGGCACTGTTGGGCCCTGTGCCCGGGCTGCAGCTGCG
ACTAAATCCGCCCGCGCAGCTGCCGGCCTCAGAGGGCCTTCGTGCCTTCCTGGAGTATGTGGCTGAGTCG
CTGGAGCCGCCATCGCCCTTCGAGTTGTTGGAGCCACCGGCTGCGGGCGGCTTTCTGCGCTTAGCAAGGC
CCTGTTGCTATGTGTTCCCGGGTGGCTTGGGAGACGCCGCCTTCTTCGCTGTCAACGGCTTTACAGTGCT
GGTGAATGGTGGCTCCAACCCCAAGTCGAGCTTCTGGAAGCTGGTGCGCCACCTGGATCGCGTGGACGCT
GTCCTTGTGACCCACGCGGGTGCTGACAGCTTGCCGGGCCTCAACAGCCTGCTGCGCCGCAAGCTGGCAG
AGCGCGAAGCAGCCGCAGGACCACAGGGACAGCATGAGGAGCGGCTACGTCGCCTGCTGTCGCCTGCGCT
GGGTGTGGTGTTCCTGAATGCTCGTGAGGCTGCTTCTCGGTTGCGTGGGGGCGAAGACGAGGCTGTGTGT
GCTCGGAGCCTGCTGCGGAGCCTGGGCATTGCGCCTCTGCCACTGCAGCGTGGCCCACAGCCCTCTTGCC
CCACTGTCCTTTTCGAGAAGCTGGGCGTAGGCCGCCTAGAGCTTTTTGTGCTGCACCCTCCTCCTGGGGA
CCCTGCAGCGCCTGCCTGTGCTCTGCTCGTGTGGCAGCCAGCGGCGCCTGGCGACAAGGTTGTGCGTGTA
CTATTTCCTGGCCGCACGCCGCCCGCGCGCCTGCTGGATGGGCTACAGCGCCTGCAGCACCTGCCGTGCC
TGCGCAGGCCAGTAGTTACCACGCATGACCTGGAAGCGCCCTCCAGGGCCAACAGCCAAGACAGTCTGGC
CTCGCGGGACAGTGCACGCAAGGAGCCAGTCCGTGGCACTGTTGGCAGCATTGCCAACAGGAGTACAGTG
CGAAGGGAGCCTGCCCTGGCCACTCGTGACCAGAAGAAGGACACAAGATCTGGGCCCACTCAGCCTACTG
CCCGAGACACACGCCGCTCCGGGCCTGGTGTGGTCAACACAAAGCCTCGTGTATCACAGAATGGGCCTCG
TGCCCCAGTTCTGGCAGCGCCACTCACAGCTCCTGTGGCTGAGTGCCCTGGAGAAGCGGAGAACATCTTG
GAGTCTGAGCGGCCACCTGCCCCATCCCCAACTCTGTCCCCAGCTCAGTCCCCACCACCTACAGCACCTG
GTAATAGCCCTGAGCGCCTGTCACTCAGCCCTCTGCGCCCAGAGCCTGCCCCTGATGCGTCGCCCTCAGC
CACGACGCCCACGCTGACCACGCCCTCTTTGCCTGCGGAGCTGGGCTCACCCCACTCAACTGAGGTGGAC
GAGTCGCTCTCTGTGTCTTTCGAGCAAGTCCTGCCAGCAGGTGACCCAGGGCTTAGCCTGCCCCTGCGCC
TCGCGCGCCGCTCCACGTCTCCTCATGATGTGGACCTGTGCCTCGTGTCACCCTGTGAGTTCTCTCATCG
CAAGCCACCCCCTCCTGCCTCCCCAGGCAGCTCGGACAGCAGTGCTCGGTCACAGGAGCGGCCACCTGAG
ACTCCACCCACGTCTGTGAGCGAGTCACTGCCCACACTATCTGACTCTGATCCCGTGCCCGTGGCGGATT
CTGATGATGACGCAGGCAGCGAGAGCGCGGCCAGGGACCCGCCGCCTACACCTCGTGTGCCACCACCACT
GCCAGATGTACCAGGAATCTGCATGGTGGACCCGGAGGCGCTACCGCCTCGTGCCCGGCAGCCCCTCAAC
ACCACCAATCCCAGCCGTAGCCGCAAGGCCCCTGCAAGGCCTAGCTCTGCCTCTGCCACCCCCAGAGCTG
CAACTGTAGCTGCCAAGACAAAGGGCCCCGCGGGGGACCGGAACCGGCCACTCAGCGCCCGCAGTGAGCC
TGCAGACAGGCCAGGCCGTGTGCCCCTTACCAGGAAGCCCTCAGTCCCTAAGACCGTTCCCAAGATGGCC
TCTGCCACAAGGCTCTCCTCCGGACCCAGTGGCCGCCCTGCACCGCTTGCTGCTGGCTCCCCTGTATACC
TGGACCTGGCCTACCTGCCTGGTGGTGGTGCCGGTCACCTGGACCAGAACTTCTTCCTGCGTGTCCGTGC
ACTCTGCTATGTCATCAGTGGGCAAGGCCAGCGCCAGGAAGAGGGCCTGCGAGCTGTGCTGGATGCACTG
CTGGCTGGCAAGCGGCAGTGGGACCTTGACTTGCAGGTCACACTGATCCCCACCTTCGACTCTGCGGTGA
TGCACAGGTGGTATGAGGAGACGCATGCGCAGCACCAGGCACTGGGCATCAGGGTGCTGGGCAGTGGCAG
CCTGGTGTCCATGCAGGACGAGGCCTTCCCCGCCTGCAAGGTGGAGTTCTAG

Translation (973 aa):
MAAVMAAPEAVEAPSSLLLLVVGGECGCPGLLAYVMEELERGVRSWEDVDPAVCSLDEQLKAFVSRHSAT
FSSIVKGQRSLHHRGETLETLVLLNPSDKSLCDELRNLLMDPAPHKLLVLAGPCLEETGELLLQTGGFSA
HHFLQVLGDKEVQDALASAPAAPALTVSCPTFGDWALLGPVPGLQLRLNPPAQLPASEGLRAFLEYVAES
LEPPSPFELLEPPAAGGFLRLARPCCYVFPGGLGDAAFFAVNGFTVLVNGGSNPKSSFWKLVRHLDRVDA
VLVTHAGADSLPGLNSLLRRKLAEREAAAGPQGQHEERLRRLLSPALGVVFLNAREAASRLRGGEDEAVC
ARSLLRSLGIAPLPLQRGPQPSCPTVLFEKLGVGRLELFVLHPPPGDPAAPACALLVWQPAAPGDKVVRV
LFPGRTPPARLLDGLQRLQHLPCLRRPVVTTHDLEAPSRANSQDSLASRDSARKEPVRGTVGSIANRSTV
RREPALATRDQKKDTRSGPTQPTARDTRRSGPGVVNTKPRVSQNGPRAPVLAAPLTAPVAECPGEAENIL
ESERPPAPSPTLSPAQSPPPTAPGNSPERLSLSPLRPEPAPDASPSATTPTLTTPSLPAELGSPHSTEVD
ESLSVSFEQVLPAGDPGLSLPLRLARRSTSPHDVDLCLVSPCEFSHRKPPPPASPGSSDSSARSQERPPE
TPPTSVSESLPTLSDSDPVPVADSDDDAGSESAARDPPPTPRVPPPLPDVPGICMVDPEALPPRARQPLN
TTNPSRSRKAPARPSSASATPRAATVAAKTKGPAGDRNRPLSARSEPADRPGRVPLTRKPSVPKTVPKMA
SATRLSSGPSGRPAPLAAGSPVYLDLAYLPGGGAGHLDQNFFLRVRALCYVISGQGQRQEEGLRAVLDAL
LAGKRQWDLDLQVTLIPTFDSAVMHRWYEETHAQHQALGIRVLGSGSLVSMQDEAFPACKVEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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