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Report for CCDS52836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52836.1 Public Mus musculus 9 Ubap1l 23 108 98 CCDS HistoryNCBI Gene:208080Re-query CCDS DB by CCDS ID:52836.1Re-query CCDS DB by GeneID:208080See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147185.2 ENSMUSP00000128815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147185.2Link to Ensembl Protein Viewer:ENSMUSP00000128815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147185Re-query CCDS DB by Protein ID:ENSMUSP00000128815
Original member NCBI NM_001111145.1 NP_001104615.1 Updated not alive Link to Nucleotide Sequence:NM_001111145.1Link to Protein Sequence:NP_001104615.1Re-query CCDS DB by Nucleotide ID:NM_001111145Re-query CCDS DB by Protein ID:NP_001104615
Current member NCBI NM_001111145.2 NP_001104615.1 Accepted alive Link to Nucleotide Sequence:NM_001111145.2Link to Protein Sequence:NP_001104615.1Re-query CCDS DB by Nucleotide ID:NM_001111145Re-query CCDS DB by Protein ID:NP_001104615Link to BLAST:NP_001104615.1

Chromosomal Locations for CCDS 52836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65369218 65369337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65371541 65372128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65373750 65373959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65376909 65377010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65377799 65377883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65380245 65380294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGAATGCCCTCGATGGTGTCCCCTTCAAGGTGTCCAAGGGCTTTGTGATGGACACAGAGCCCCACCCCG
TGCCTGAGCTCAGTGTCCCGGACTGTAGAGAGCTCCTGCTGGGCACAATGTATGACTTCAGCCTGGAAAA
GAAGGCTCTCTTTTGGGTGGAAGCAGCCATCCGAGGATCTTGCTCCCATCAGTGCAATGACCTGGGGATT
GCATCAGCCCCTCCAGCCTGGTTCTTACTGGCCAGTCCAAAATACAGTCAGGTGCCTGCACCTGCTCAAA
TCAGAGACCCAGAGGCTGGACTGCAAGAACCTCCTGAAGAAGAGGAGGAAGAGGAGGAGGAGGAGGAAGA
AGAAACAGAAGAGAAGGGGGACGAGGAAGACACCTCCTCTGCCTGTGAGGAGGGCATGGACTCCAGCAGC
CCTCAGCCCGGCTCCCCTACAAGCCATCGTCGCTGCTCCCTGGATGTGCTGCGAAACATGAGGTCTGAGC
TGGCTGACGCCAGGCGGCGGCTCTCGGAGAGTAGACTAACCGCGTGTCCTCGAGCCCTCCTGCACCGCTT
CCGCGGCCATCGCACACTGAGCCTGAGCACCAGCCCGGCTCCAGCCCCTGGCCCAGCACCACAGCTCCCA
AATGTCTCGGAGCTGCCTCCACGACCCGCCACCGCCGGCGCCATGCCTCCATTGCGGAACCACAAGCCCA
CAGTTGCTTCCCTCAGCCCATACACCTGCTTACCACCTCTGAGGGAGACACCCCAGCCCCTCGTCTCCTG
TAGACTGCATCCTGATTCAGCACCCGACCTGCTGTCTGCCCTGACCGAAGAGGAGCAAGACCTCATTGGG
CCAGTGGTCGCCTTGGGCTATCCCCTGGGAAGGGCCATGGAGGCACTGCAGAAGACAGGGAGGCAGAGCC
TGAGCCAGTTTCTCGGCTACCTCAGTGCCTGCGACAGGCTGCTGCGGCAGGGCTACGACGAGGCGCTGGT
GGATGAGGCCATGGAGATGTTTCAGTTCTCCGAGCATCAGGCAGGGGAGTTCCTGCGGCTCTGGAAGCAG
TTCAGTGACATGGGCTTCCAGCAAGACCGGATCAAGGAGGTGCTGTTGGTCCACGCTTCAGAAGGGAAAA
CAGCAGCATCCTGCACCCAACCTCAGAACCCCTGA

Translation (384 aa):
MNALDGVPFKVSKGFVMDTEPHPVPELSVPDCRELLLGTMYDFSLEKKALFWVEAAIRGSCSHQCNDLGI
ASAPPAWFLLASPKYSQVPAPAQIRDPEAGLQEPPEEEEEEEEEEEEETEEKGDEEDTSSACEEGMDSSS
PQPGSPTSHRRCSLDVLRNMRSELADARRRLSESRLTACPRALLHRFRGHRTLSLSTSPAPAPGPAPQLP
NVSELPPRPATAGAMPPLRNHKPTVASLSPYTCLPPLRETPQPLVSCRLHPDSAPDLLSALTEEEQDLIG
PVVALGYPLGRAMEALQKTGRQSLSQFLGYLSACDRLLRQGYDEALVDEAMEMFQFSEHQAGEFLRLWKQ
FSDMGFQQDRIKEVLLVHASEGKTAASCTQPQNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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