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Report for CCDS8937.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8937.2 Public Homo sapiens 12 R3HDM2 24 110 108 CCDS HistoryNCBI Gene:22864Re-query CCDS DB by CCDS ID:8937.2Re-query CCDS DB by GeneID:22864See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8937.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347140.7 ENSP00000317903.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347140.7Link to Ensembl Protein Viewer:ENSP00000317903.6Re-query CCDS DB by Nucleotide ID:ENST00000347140Re-query CCDS DB by Protein ID:ENSP00000317903
Original member Current member EBI ENST00000358907.6 ENSP00000351784.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358907.6Link to Ensembl Protein Viewer:ENSP00000351784.2Re-query CCDS DB by Nucleotide ID:ENST00000358907Re-query CCDS DB by Protein ID:ENSP00000351784
Original member Current member NCBI NM_014925.5 NP_055740.3 Accepted alive Link to Nucleotide Sequence:NM_014925.5Link to Protein Sequence:NP_055740.3Re-query CCDS DB by Nucleotide ID:NM_014925Re-query CCDS DB by Protein ID:NP_055740Link to BLAST:NP_055740.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055740.3 976 Q9Y2K5-1 976 100% 0 0

Chromosomal Locations for CCDS 8937.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57254773 57255113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57255990 57256074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57256414 57256511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57257990 57258137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57258890 57259059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57266731 57266831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57268303 57268457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57268922 57269082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57269323 57269449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57269752 57269994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57280358 57280530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57283824 57284056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57288857 57288910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57289009 57289040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57295399 57295507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57296411 57296551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57297328 57297387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57298090 57298168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57299352 57299478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57300095 57300181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57303176 57303217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57310264 57310428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2931 nt):
ATGTCTAACAGTAACACTACTCAAGAGACCCTGGAAATAATGAAAGAATCAGAAAAAAAACTGGTGGAAG
AATCTGTAAACAAAAACAAGTTTATATCTAAGACTCCAAGTAAGGAAGAAATTGAGAAAGAATGTGAAGA
TACCAGTTTGCGTCAGGAGACACAGAGGCGGACATCTAACCATGGTCATGCCAGGAAAAGAGCCAAGTCT
AATTCCAAGCTAAAGTTGGTGCGTAGCCTGGCAGTGTGTGAGGAGTCCTCCACCCCATTTGCTGATGGGC
CATTAGAAACCCAGGATATAATTCAATTGCACATCAGTTGCCCTTCTGACAAGGAGGAAGAAAAGTCCAC
AAAAGATGTCTCTGAAAAGGAAGACAAGGACAAAAACAAAGAAAAGATCCCAAGGAAGATGCTGTCCAGA
GACTCCAGCCAGGAATATACGGACTCCACTGGAATAGACCTACATGAATTTCTTGTAAATACACTGAAAA
AGAACCCAAGGGACAGAATGATGCTGCTAAAATTAGAACAGGAGATTCTGGAATTTATTAATGACAACAA
TAATCAGTTCAAGAAGTTCCCTCAGATGACCTCATATCACCGGATGCTATTACACCGGGTAGCTGCCTAT
TTTGGGATGGACCACAATGTTGATCAAACTGGGAAAGCTGTCATCATCAACAAAACTAGTAACACAAGAA
TCCCTGAACAGAGGTTCTCAGAACATATAAAGGATGAGAAGAATACAGAATTTCAACAGAGGTTCATTCT
CAAGAGAGATGATGCCAGTATGGACCGAGATGATAACCAGACTGGCCAGAACGGATATCTAAATGACATC
AGACTCTCCAAAGAAGCCTTTTCTTCTAGCTCTCACAAGAGAAGGCAGATTTTTAGGGGGAACCGTGAAG
GACTGAGCCGCACCTCAAGCAGCCGCCAGAGCAGCACAGACAGCGAACTCAAATCCCTGGAGCCACGCCC
TTGGAGCAGCACAGACTCTGATGGCTCTGTCCGGAGCATGCGACCCCCTGTCACCAAAGCTAGCAGCTTC
AGTGGAATCTCTATCCTTACCCGAGGTGACAGCATCGGCAGCAGTAAAGGCGGCAGTGCGGGAAGGATCT
CCAGGCCAGGTATGGCACTAGGTGCCCCAGAAGTGTGCAACCAGGTCACCTCATCCCAGTCTGTCCGGGG
GCTTCTCCCTTGTACTGCCCAGCAGCAACAGCAGCAGCAGCAGCAGCAACTTCCTGCTCTCCCACCCACG
CCTCAGCAACAGCCACCCTTGAATAATCACATGATCTCACAGGCAGATGACCTCAGCAACCCCTTTGGAC
AAATGAGCCTTAGTCGCCAAGGTTCTACTGAAGCAGCTGACCCATCTGCAGCTCTATTCCAGACCCCACT
TATCTCCCAGCACCCTCAGCAGACTAGCTTCATCATGGCTTCCACGGGTCAGCCCCTCCCCACTTCCAAC
TATTCCACCTCTAGCCATGCACCACCTACTCAGCAAGTTCTGCCACCCCAGGGGTACATGCAGCCCCCTC
AACAGATCCAGGTTTCTTACTATCCCCCTGGACAATATCCTAACTCCAACCAGCAATATCGACCTCTCTC
TCACCCGGTGGCCTATAGCCCCCAACGTGGTCAGCAGCTGCCTCAGCCATCCCAGCAGCCTGGTTTACAG
CCCATGATGCCTAACCAGCAGCAGGCGGCTTACCAAGGCATGATTGGGGTCCAGCAGCCACAGAACCAGG
GCCTGCTCAGCAGCCAGAGGAGCAGCATGGGGGGCCAGATGCAAGGCCTGGTGGTTCAGTACACTCCACT
GCCTTCTTACCAAGTTCCAGTGGGTAGTGACTCGCAAAATGTGGTCCAGCCGCCTTTCCAGCAACCCATG
CTGGTCCCTGTGAGCCAGTCTGTGCAAGGAGGCCTCCCAGCAGCGGGGGTACCAGTGTACTATAGCATGA
TCCCACCTGCTCAGCAGAACGGTACGAGCCCTTCTGTAGGGTTTCTGCAACCCCCTGGCTCTGAGCAGTA
CCAGATGCCTCAGTCTCCCTCTCCCTGCAGTCCACCACAGATGCCACAGCAGTACTCAGGAGTGTCACCT
TCTGGACCAGGTGTAGTGGTCATGCAGCTGAATGTCCCTAATGGACCCCAGCCCCCTCAGAACCCATCCA
TGGTCCAGTGGAGTCATTGTAAATACTACAGCATGGACCAGCGGGGGCAGAAGCCTGGAGACCTGTACAG
TCCTGACAGCAGCCCCCAGGCCAACACACAAATGAGCAGCAGCCCTGTCACATCTCCTACCCAGTCTCCA
GCACCCTCTCCTGTCACCAGCCTCAGCAGTGTCTGCACAGGACTCAGTCCCCTGCCTGTCCTCACACAGT
TCCCCCGGCCTGGGGGTCCAGCACAGGGTGATGGGCGCTACTCCCTTTTGGGCCAGCCATTACAGTACAA
TCTGTCCATCTGCCCTCCCTTGCTCCATGGCCAGTCAACTTACACGGTGCACCAGGGACAGAGTGGACTG
AAGCATGGAAACCGGGGCAAGAGACAAGCACTCAAATCTGCCTCCACTGACCTGGGGACAGCAGATGTTG
TCCTGGGGCGGGTGCTGGAGGTGACAGATCTCCCTGAGGGCATCACCCGTACTGAGGCGGACAAACTCTT
CACGCAGCTCGCCATGTCTGGCGCCAAGATCCAGTGGCTCAAGGATGCTCAGGGGCTGCCTGGAGGGGGT
GGGGGGGACAACAGTGGGACTGCTGAGAATGGCCGCCACTCGGACCTCGCTGCCTTGTACACCATTGTGG
CTGTGTTCCCCAGCCCCCTGGCTGCCCAAAATGCCTCCCTTCGTCTCAACAACTCCGTGAGTCGCTTCAA
ACTTCGAATGGCCAAAAAGAACTATGACCTGAGGATCCTGGAGCGAGCCAGCTCCCAATAA

Translation (976 aa):
MSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEEIEKECEDTSLRQETQRRTSNHGHARKRAKS
NSKLKLVRSLAVCEESSTPFADGPLETQDIIQLHISCPSDKEEEKSTKDVSEKEDKDKNKEKIPRKMLSR
DSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAY
FGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQTGQNGYLNDI
RLSKEAFSSSSHKRRQIFRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSF
SGISILTRGDSIGSSKGGSAGRISRPGMALGAPEVCNQVTSSQSVRGLLPCTAQQQQQQQQQQLPALPPT
PQQQPPLNNHMISQADDLSNPFGQMSLSRQGSTEAADPSAALFQTPLISQHPQQTSFIMASTGQPLPTSN
YSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQPSQQPGLQ
PMMPNQQQAAYQGMIGVQQPQNQGLLSSQRSSMGGQMQGLVVQYTPLPSYQVPVGSDSQNVVQPPFQQPM
LVPVSQSVQGGLPAAGVPVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMPQQYSGVSP
SGPGVVVMQLNVPNGPQPPQNPSMVQWSHCKYYSMDQRGQKPGDLYSPDSSPQANTQMSSSPVTSPTQSP
APSPVTSLSSVCTGLSPLPVLTQFPRPGGPAQGDGRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGL
KHGNRGKRQALKSASTDLGTADVVLGRVLEVTDLPEGITRTEADKLFTQLAMSGAKIQWLKDAQGLPGGG
GGDNSGTAENGRHSDLAALYTIVAVFPSPLAAQNASLRLNNSVSRFKLRMAKKNYDLRILERASSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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