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Report for CCDS52036.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52036.2 Public Mus musculus 7 C5ar2 23 108 98 CCDS HistoryNCBI Gene:319430Re-query CCDS DB by CCDS ID:52036.2Re-query CCDS DB by GeneID:319430See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 52036.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171425.3 ENSMUSP00000133056.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171425.3Link to Ensembl Protein Viewer:ENSMUSP00000133056.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171425Re-query CCDS DB by Protein ID:ENSMUSP00000133056
Original member Current member EBI ENSMUST00000238927.1 ENSMUSP00000158951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238927.1Link to Ensembl Protein Viewer:ENSMUSP00000158951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238927Re-query CCDS DB by Protein ID:ENSMUSP00000158951
Original member Current member NCBI NM_001146005.2 NP_001139477.2 Accepted alive Link to Nucleotide Sequence:NM_001146005.2Link to Protein Sequence:NP_001139477.2Re-query CCDS DB by Nucleotide ID:NM_001146005Re-query CCDS DB by Protein ID:NP_001139477Link to BLAST:NP_001139477.2
Original member Current member NCBI NM_176912.5 NP_795886.3 Accepted alive Link to Nucleotide Sequence:NM_176912.5Link to Protein Sequence:NP_795886.3Re-query CCDS DB by Nucleotide ID:NM_176912Re-query CCDS DB by Protein ID:NP_795886Link to BLAST:NP_795886.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139477.2 344 Q8BW93 344 100% 0 0
NP_795886.3 344 Q8BW93 344 100% 0 0

Chromosomal Locations for CCDS 52036.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16236924 16237958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGATGAACCACACCACCAGCGAGTATTATGACTATGAGTATGACCATGAACACTACAGTGACCTTCCGG
ACGTGCCCGTAGACTGCCCAGCTGGCACCTGCTTCACTAGTGATGTCTACCTGATAGTCCTGCTTGTGCT
GTATGCAGCCGTCTTCCTGGTGGGTGTGCCAGGCAACACCCTGGTGGCGTGGGTGACCTGGAAAGAGTCC
CGCCACAGGCTTGGGGCCTCTTGGTTCCTGCACCTGACCATGGCCGACTTGCTTTGTTGTGTGTCTCTGC
CCTTCCTGGCTGTGCCCATCGCCCAAAAGGGCCACTGGCCATACGGGGCGGCAGGCTGCTGGCTGTTGTC
CTCCATCACCATTCTGTCTATGTATGCCAGTGTGCTGCTCCTGACCGGCCTCAGCGGAGACCTCTTCCTA
CTGGCTTTCAGGCCCTCCTGGAAGGGTGCAGATCATCGAACATTTGGGGTGCGTGTGGTCCAGGCCTCCT
CCTGGATGCTGGGCCTCTTGCTGACTGTGCCTTCTGCTGTCTACCGTAGGCTGCTTCAGGAGCACTATCC
TCCCCGACTTGTGTGTGGCATAGACTATGGGGGATCGGTCAGCGCCGAGGTTGCCATCACCACTGTTCGA
TTCCTCTTTGGCTTCCTGGGGCCATTGGTGTTCATGGCCGGTTGTCACGGCATCCTCCAACGGCAGATGG
CCCGCCGCCATTGGCCCCTGGGCACAGCTGTCGTGGTGGGGTTTTTCATTTGCTGGACCCCTTATCACGT
CCTGCGGGTAATCATTGCAGCGGCTCCTCCGCACTCCTTGCTCCTCGCCCGGGTCCTGGAGGCGGAGCCT
CTGTTTAATGGCCTGGCCCTGGCTCACAGTGCTCTCAATCCCATAATGTTTTTGTATTTCGGAAGAAAAC
AACTCTGCAAGTCACTCCAGGCTGCATGCCACTGGGCCCTGAGGGATCCACAGGATGAGGAAAGTGCGGT
GACCAAGGTATCCATATCCACCAGCCACGAAATGGTGTCTGAGATGCCGGTGTAG

Translation (344 aa):
MMNHTTSEYYDYEYDHEHYSDLPDVPVDCPAGTCFTSDVYLIVLLVLYAAVFLVGVPGNTLVAWVTWKES
RHRLGASWFLHLTMADLLCCVSLPFLAVPIAQKGHWPYGAAGCWLLSSITILSMYASVLLLTGLSGDLFL
LAFRPSWKGADHRTFGVRVVQASSWMLGLLLTVPSAVYRRLLQEHYPPRLVCGIDYGGSVSAEVAITTVR
FLFGFLGPLVFMAGCHGILQRQMARRHWPLGTAVVVGFFICWTPYHVLRVIIAAAPPHSLLLARVLEAEP
LFNGLALAHSALNPIMFLYFGRKQLCKSLQAACHWALRDPQDEESAVTKVSISTSHEMVSEMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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